Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,787,745 – 4,787,856 |
Length | 111 |
Max. P | 0.624811 |
Location | 4,787,745 – 4,787,856 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -14.95 |
Energy contribution | -15.67 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -2.00 |
Structure conservation index | 0.64 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4787745 111 + 22407834 -UCAAAAUUGUUCUUA-UCCUUUGAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((.(((........))).))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -24.52) >DroSec_CAF1 236004 111 + 1 -UCAAAAUAAUUCUUA-UCCUUUGAACUCUUUCAUUAUUAAGAGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((((((........))))))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -29.02) >DroSim_CAF1 213163 111 + 1 -UCAAAAUUCUUCCUA-UCGUUUGAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((.(((........))).))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -24.52) >DroEre_CAF1 225036 112 + 1 -UCUAAAUAGUUUCUAUUCCUUGAAAGUCUUUCAUUAUGCAGCGUUCUGUGUCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -.........((((........))))...........(((.((((.....(((.((.....)).)))....)))).........((((((....))))))....)))...... ( -20.70) >DroYak_CAF1 223949 112 + 1 -UAGACAUGUAACUUUACCCUUGAAACUCUUUCAUUAUUUAGCGUACUCUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUGAUGGUGGAAACGCCAUUAACGCACACACA -......(((...........((((.....)))).......((((........(((((.............)))))......((((((((....))))))))))))))).... ( -22.82) >DroAna_CAF1 233273 107 + 1 UUCUAGUCGAAUCUUG-UCCGAUAAACUCGUUACUUCUU---CGUCC--UGCCUGCCUAGGCUUGAUUAAUAUGCAAUUUCUUGACGGCAGAAUCGCCAUUAACGCACACUCU .....(((((...(((-(.(((.....))).........---.(((.--.((((....))))..)))......))))....)))))(((......)))............... ( -17.60) >consensus _UCAAAAUAAUUCUUA_UCCUUUAAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA ...............................................(((((.(((((.............)))))........((((((....))))))....))))).... (-14.95 = -15.67 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:12 2006