Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,774,138 – 4,774,232 |
Length | 94 |
Max. P | 0.533034 |
Location | 4,774,138 – 4,774,232 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -18.52 |
Energy contribution | -18.72 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.83 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4774138 94 + 22407834 GGGCUCUGAAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAACUCCGCCCACUUUCCACUUUCCACCUGCC ((((...((.....((((((....))))))(((.(((......))).))).))(((..........)))))))..................... ( -21.60) >DroSec_CAF1 222475 87 + 1 GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGUAAAACGCCAACUCCGCCCACUU-------UUCACCUGCC ((((...(((....((((((....))))))(((.(((......))).)))................)))))))....-------.......... ( -21.20) >DroSim_CAF1 199408 87 + 1 GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAAGUCCGCCCACUU-------UUCACCUGCC .(((....((((((((((((....))))).(((.(((......))).)))..((((..........))))...))))-------)))....))) ( -23.20) >DroEre_CAF1 211258 87 + 1 GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACCCCAACUCCACCCACUU-------UUCACCUGCC .(((....((((((((((((....))))).(((.(((......))).)))...(((..........)))....))))-------)))....))) ( -22.50) >DroYak_CAF1 209637 87 + 1 GGGCUCUGCAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCGCCGGAAAAGCCCAACUCCGCCCACUU-------UUCACCUGCC ((((...((.....((((((....))))))(((.(((......))).))))).(((..........)))))))....-------.......... ( -23.10) >consensus GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAACUCCGCCCACUU_______UUCACCUGCC ((((..........((((((....))))))(((.(((......))).)))...................))))..................... (-18.52 = -18.72 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006