Locus 1744

Sequence ID 2L_DroMel_CAF1
Location 4,771,921 – 4,772,024
Length 103
Max. P 0.768232
window2800

overview

Window 0

Location 4,771,921 – 4,772,024
Length 103
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -22.54
Consensus MFE -13.38
Energy contribution -13.49
Covariance contribution 0.12
Combinations/Pair 1.35
Mean z-score -2.03
Structure conservation index 0.59
SVM decision value 0.52
SVM RNA-class probability 0.768232
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4771921 103 - 22407834
ACUAAUCGCUGCUAAUUCCAA-AACUUGGCAGCAGCU-UACAAAAGCCAGAUGACAGGCAUCAUAAAGUUUUGGAA-----AAAUACAGGAC---ACUGUGUAAUUUUCCCAA
.......((((((((......-...)))))))).(((-(....))))..((((.....))))..........((((-----((((((((...---.))))))..))))))... ( -27.40)
>DroPse_CAF1 247053 105 - 1
ACUAAUCGUUUCUUUUUUCU--UACUUGGCAACAGCU-UACCAAAGCCAGAUGACACCCGUCAUAAAGUUUAGAAA-----AGACAUCUAACAGAAAUGCGCAACUUGGCCAA
......((((((((((((((--.(((((((.......-.......)))..(((((....))))).))))..)))))-----)).........))))))).((......))... ( -17.84)
>DroSec_CAF1 220250 104 - 1
ACUAAUCGCUUCUAAUUCCAAAAACUUGGCAGCAGCU-UACAAAAGCCAGAUGACAGGCAUCAUAAAGUUUUGGAA-----AAAUACAGGAC---ACUGUGUAAUUUGGCCAA
.......(((.....((((((((.((((((.......-.......))).((((.....))))...)))))))))))-----..((((((...---.)))))).....)))... ( -23.44)
>DroEre_CAF1 208970 102 - 1
ACUAAUCGCUUCUAAUUCCAA-AACUUGGCAGCAGCU-UACAAAAGCCAGAUGACAGGCAUCAUAAAGUUUU-GAA-----AAACACAGGAC---ACUGUGAUAUUUGCCCAA
.......((.........(((-((((((((.......-.......))).((((.....))))...)))))))-)..-----...(((((...---.)))))......)).... ( -21.54)
>DroYak_CAF1 207310 103 - 1
ACUAAUCGCUUCUAAUUCCAA-AACUUGGCAGCAGCU-UACGAAAGCCAGAUGACAGGCAUCAUAAAGUUUUUAAA-----AAAUACAGGAC---ACUGUGUAAUUUGGCCAA
.......(((.((((......-...)))).)))....-.......((((((((.....))))..............-----..((((((...---.))))))....))))... ( -19.30)
>DroAna_CAF1 217933 104 - 1
ACUAAUUGUU--UAAUUUUUGAAACUUGGCAGCAACUUUGCCAAAGCCAGAUG-CACCCAUCAUAAAGUUUUGUAAUCUCAGAACACAGA-----UCUGUGCCAUUUGGUCA-
.......(((--(........))))(((((((.....))))))).((((((((-(((..(((.....((((((......))))))...))-----)..))).))))))))..- ( -25.70)
>consensus
ACUAAUCGCUUCUAAUUCCAA_AACUUGGCAGCAGCU_UACAAAAGCCAGAUGACAGGCAUCAUAAAGUUUUGGAA_____AAACACAGGAC___ACUGUGUAAUUUGGCCAA
...............((((((.((((((((...............))).((((.....))))...)))))))))))........(((((.......)))))............ (-13.38 = -13.49 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:02 2006