Locus 1743

Sequence ID 2L_DroMel_CAF1
Location 4,769,504 – 4,769,624
Length 120
Max. P 0.601403
window2799

overview

Window 9

Location 4,769,504 – 4,769,624
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.95
Mean single sequence MFE -25.31
Consensus MFE -20.40
Energy contribution -21.36
Covariance contribution 0.96
Combinations/Pair 1.03
Mean z-score -1.54
Structure conservation index 0.81
SVM decision value 0.14
SVM RNA-class probability 0.601403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4769504 120 - 22407834
CUAAUGCAAAUUGUGACCUAUAAAAUCAAUCUUAAUCGAUUGCUGAAGGCGUGAUGACACUUGGGGAAAUUGGCUUAUUUAUUAGCACAAUUUAUCAUUUGUAUUCUACGCAGGUUAAAC
.............((((((.......(((((......)))))......((((((..(((..(((..(((((((((........))).)))))).)))..)))..)).))))))))))... ( -28.00)
>DroSec_CAF1 217881 115 - 1
CUAAUGCAAAUUGUGACCUAUAAAAUCAAUCUUAAUCGAUU---GAAGGCGUGAUGACACUUG--AAAAUUGGCUUAUUUAUUAGCACAAUUUAUCAUUUGUAUUCUACGCAGGUUAAAC
.............((((((......((((((......))))---))..((((((..(((..((--((((((((((........))).)))))).)))..)))..)).))))))))))... ( -30.40)
>DroSim_CAF1 194839 118 - 1
CUAAUGCAAAUUGUGACCUAUAAAAUCAAUCUUAAUCGAUUGCCGAAGGCGUGAUGACACUUG--GAAAUUGGCUUAUUUAUUAGCACAAUUUAUCAUUUGUAUUCUACGCAGGUUAAAC
.............((((((.......(((((......)))))......((((((..(((..((--((((((((((........))).)))))).)))..)))..)).))))))))))... ( -27.40)
>DroEre_CAF1 206510 118 - 1
GUAAUGCAAAUUUUGACCUAUAAAAUCAAUCUUAAUCGAUUGCCGAAGGCGUGAUGACACUUG--GGAAUUGGCUUAUUUAUUACCACAAUUUAUCAUUUGUAUUCUAAGCAGGUUAAAC
...........((((((((.......(((((......)))))......((..((..(((..((--(((((((...............)))))).)))..)))..))...)))))))))). ( -20.36)
>DroYak_CAF1 204797 118 - 1
CUAAUGCAAAUUUUGACCUAUAAAAUCAAUCUUAAUCGAUUGCUGAAGGCGUGAUGACACUUG--GGAAUUGGCUUAUUUAUUACCACAAUUUAUCAUUUGUAUUCUUAGCAGGUUAAAC
...........((((((((........((((......))))(((((..(((((((((....((--(..................)))....)))))))..))....))))))))))))). ( -20.37)
>consensus
CUAAUGCAAAUUGUGACCUAUAAAAUCAAUCUUAAUCGAUUGCCGAAGGCGUGAUGACACUUG__GAAAUUGGCUUAUUUAUUAGCACAAUUUAUCAUUUGUAUUCUACGCAGGUUAAAC
.............((((((.......(((((......)))))......((((((..(((..((...(((((((((........))).))))))..))..)))..)).))))))))))... (-20.40 = -21.36 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006