Locus 1741

Sequence ID 2L_DroMel_CAF1
Location 4,762,026 – 4,762,120
Length 94
Max. P 0.555484
window2796

overview

Window 6

Location 4,762,026 – 4,762,120
Length 94
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 66.14
Mean single sequence MFE -24.23
Consensus MFE -8.12
Energy contribution -8.57
Covariance contribution 0.45
Combinations/Pair 1.38
Mean z-score -1.76
Structure conservation index 0.33
SVM decision value 0.04
SVM RNA-class probability 0.555484
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4762026 94 + 22407834
ACACGUGUC----AACG--GCAGAG--GUAUU---UCUUUUUUUU----UUCGAGGAAAUACAAUCAGAAACCGGACAGAUUGGA--GCCCAGCGAAUGAUACGUGU--ACAC
(((((((((----(..(--((.((.--(((((---(((((.....----...))))))))))..)).....((((.....)))).--))).......))))))))))--.... ( -26.70)
>DroSec_CAF1 210344 86 + 1
ACACGUGUC----AACG--GCAGAG--GUAUU-----------UU----UUCGGGGAAAAACAAUCAGAAAAGAGCCAGAUUGGA--GCCUAGCAAAGGAUACGUGU--ACAC
(((((((((----....--((..((--((.((-----------((----(((...((.......)).))))))).((.....)).--)))).))....)))))))))--.... ( -25.50)
>DroSim_CAF1 187322 86 + 1
ACACGUGUC----AACG--GCAGAG--GUAUU-----------UU----UUCGAGGAAAGACAAUCAGAAAAGAGCCAGAUUGUA--GCCCAGCGAAGGAUACGUGU--ACAC
(((((((((----....--((.(((--(....-----------.)----)))(.((....((((((............)))))).--.))).))....)))))))))--.... ( -23.30)
>DroEre_CAF1 198946 92 + 1
ACAUGUGAC----AUGU--GCAGAC--GUAUU-----------UUUUAUUUCGGGGAAAGACAAUCAGAACCUGGCCAGAUUGGA--GCCCAGCGAAAGAUACGUGUGUACAC
.........----.(((--(((.((--(((((-----------((((......(((.....(((((............)))))..--.)))...))))))))))).)))))). ( -28.10)
>DroYak_CAF1 197086 88 + 1
GCGCGUGUC----AACG--UCAGAG--UUAUU-----------UU----UUCGGCAAAAGACAAUCAGAACACGGCCAGAUUGGA--GUCCAGCAAAGGAUACGUGUGUGCAC
((((.((((----...(--((.(((--.....-----------..----))))))....))))......(((((.((.....)).--((((......)))).))))))))).. ( -22.50)
>DroAna_CAF1 208524 98 + 1
ACACGUCACUGCUAACCAGUCUGGUGAAUAUUCUUUAUUCUUUUU----UCCG---UUCUGCAAUCC------AAACUGAUUCAAUGGCCCUCCAUAUGGGGGACUU--ACAC
....((((.((.....((((.(((.(((((.....))))).....----...(---.....)...))------).))))...)).))))(((((....)))))....--.... ( -19.30)
>consensus
ACACGUGUC____AACG__GCAGAG__GUAUU___________UU____UUCGGGGAAAGACAAUCAGAAAACAGCCAGAUUGGA__GCCCAGCAAAGGAUACGUGU__ACAC
(((((((((....................................................(((((............)))))....((...))....)))))))))...... ( -8.12 =  -8.57 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:58 2006