Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,761,816 – 4,761,917 |
Length | 101 |
Max. P | 0.515001 |
Location | 4,761,816 – 4,761,917 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -17.61 |
Energy contribution | -18.13 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.25 |
Mean z-score | -2.13 |
Structure conservation index | 0.51 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4761816 101 - 22407834 AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGGAAAAAA---------------UUGCAGCUUUUCG-CCUACAGGUGAAGCCAAU ....--....(((((((....(....).((((((((...(((((((((((.((........)).))))....---------------.))))))))))))-)))...))))..)))... ( -34.70) >DroSec_CAF1 210134 101 - 1 AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCGGCGGAGAAAAA---------------AUGCAGCUUUUCC-CCUACAGGUGGUGCCAAU ....--....((.(((((.(.(....)((((.((((...((((((((((((.((.....)).))))......---------------)))))))))))))-)))...).)))))))... ( -35.30) >DroSim_CAF1 187111 102 - 1 AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGGGAAAAA---------------AUGCAGCUUGCCAAAAUACAGGUGGAGCCAAU ....--....((((((((((((.(....).)).......(((((((((((.((........)).)).....)---------------)))))))).)))........))))..)))... ( -28.50) >DroEre_CAF1 198713 118 - 1 AACCAGAAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGUCGAUUCGUAGCGACAAAAAAAAAAAAAAAACGUAGGUGAAAGCUUUCG-CCUACAGGUGAAGCCAAU ..((((.........))))(((.(....).)))...(((((((.(((((.((((........)))).................(((((((((....))))-)))))))))).))))))) ( -37.90) >DroYak_CAF1 196868 102 - 1 AACA--AAUCGGUCAGUGGCGCGUGAGCGGGUGAAAAUUGGCUGCAU-UCGUCGAUUCGUAGUGGCGAAAAAAA-------------GUGCAGCUUUUCG-CCUACAGGUGGAGCCAAU ....--..........((((((....))((((((((...((((((((-((((((........))))))......-------------)))))))))))))-))).........)))).. ( -37.50) >consensus AACA__AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGCGAAAAA_______________AUGCAGCUUUUCG_CCUACAGGUGGAGCCAAU ..........(((((((..(((.(....).)))......((((((((((((.(........))))).....................))))))))............))))..)))... (-17.61 = -18.13 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:57 2006