Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,761,178 – 4,761,287 |
Length | 109 |
Max. P | 0.750809 |
Location | 4,761,178 – 4,761,287 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -26.49 |
Consensus MFE | -17.98 |
Energy contribution | -17.26 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.23 |
Mean z-score | -1.69 |
Structure conservation index | 0.68 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4761178 109 + 22407834 UAUGUAAGUACUAAUGCGCUACGUCCUGAUUCCCAACCCGAUUCGCAUUGCAAUUGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGUU .(((((.(..(....)..))))))...((..(((((((.(((..(((((((....))(((((....))))))))))(((.........)))))))))))))...))... ( -27.60) >DroPse_CAF1 228275 109 + 1 CUUCUAUAUAUUAAUGCGCUUUGCAGUGAUUCUCUGCCUGAUUCGCAUUCCAAUUGCAAAGUAAAUGCCUUAAUGUGCUUAUCCUUUUAGCAACGGUUGGGCAUUCGCU ...............((((((((((((.......(((.......))).....)))))))))).(((((((...((((((.........))).)))...))))))).)). ( -28.00) >DroEre_CAF1 198084 97 + 1 UAUGUAGGUACUAAUGCGCUCCGGCCU------------GAUUCGCAUUGCAAUCGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGUU .........((.(((((.(.(((((((------------((..((((((((....))(((((....))))))))))).........)))).)))))..).))))).)). ( -25.40) >DroYak_CAF1 196214 92 + 1 UAUGUAGGUACUAAUGCGCUCC-----------------GAUUCGCAUUGCAAUUGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGCU ..(((((....(((((((....-----------------....)))))))...))))).((..(((((((...((((((.........)))).))...)))))))..)) ( -24.80) >DroAna_CAF1 207780 109 + 1 UUUAUAUGUAUUAAUGCGCUUUGUCUUGAUUCCCGCCCCGAUUCCCAUUGCAAUUGCAAAGUAAAUGCCCUAAUGCGCUUAUCCUUUUAGCGCCAGUUGGGCAUUUGUU ..............((((..((((..((.................))..)))).))))...(((((((((....(((((.........))))).....))))))))).. ( -25.13) >DroPer_CAF1 236041 109 + 1 CUUCUAUAUAUUAAUGCGCUUUGCAGUGAUUCUCUGCCUGAUUCGCAUUCCAAUUGCAAAGUAAAUGCCUUAAUGUGCUUAUCCUUUUAGCAACGGUUGGGCAUUCGCU ...............((((((((((((.......(((.......))).....)))))))))).(((((((...((((((.........))).)))...))))))).)). ( -28.00) >consensus UAUGUAUGUACUAAUGCGCUUCGCCCUGAUUC_C__CC_GAUUCGCAUUGCAAUUGCAAAGUAAAUGCCUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGCU ...........(((((((.........................))))))).........((..(((((((...((((((.........)))).))...)))))))..)) (-17.98 = -17.26 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:56 2006