Locus 1738

Sequence ID 2L_DroMel_CAF1
Location 4,760,629 – 4,760,727
Length 98
Max. P 0.582235
window2793

overview

Window 3

Location 4,760,629 – 4,760,727
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 73.24
Mean single sequence MFE -17.74
Consensus MFE -4.33
Energy contribution -4.59
Covariance contribution 0.25
Combinations/Pair 1.54
Mean z-score -2.34
Structure conservation index 0.24
SVM decision value 0.10
SVM RNA-class probability 0.582235
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4760629 98 + 22407834
ACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAAGACUUUUUUCU--ACCACCCCUUUGCACUAAC---CCCC-AUUUAACGCCCUC---UUUUUCCGCCA
.....((((.......))))..((((..((((((((....))))))))...--...........((......---....-.......))....---.....)))).. ( -17.83)
>DroSec_CAF1 208942 96 + 1
ACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUU--UUCC--ACCGCCCCCUUGCACCAAC---CCCC-UUUUAACGCCCUC---UUUUUCCGCCA
.....((((.......))))..((((..((((((((....)))))--))).--.))))..............---....-.............---........... ( -22.30)
>DroSim_CAF1 185911 96 + 1
ACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUC--UCCC--ACCACCCCCUUGCACCAAC---CCCC-UUUUAACGCCCUC---UUUUUCCGCCA
.....((((.......))))....(((.((((((((....)))..--....--...........((......---....-.......))....---.))))).))). ( -15.43)
>DroEre_CAF1 197536 95 + 1
ACAAAGUGUAACCUUAACACACGCGGCUGAAAAGGCGAAGGACUU--UUCCGAACC-CCCCUUUUCAGCACC----CAC-UUUUUGCACCCCC----UUUCCCGCCA
.....((((.......))))..(((((((((((((....(((...--.))).....-..))))))))))...----((.-....)).......----.....))).. ( -21.40)
>DroWil_CAF1 197918 87 + 1
CCAAAAUGUAACCUUAACACACACGGCGGCCGGUCCCAA---CUU--CGCU--U-----CCCCUGUCCUGAC---UACU-GUU----GCCCUUUCCUUUAACCUCCC
........................((((((.((((...(---(..--....--.-----.....))...)))---)...-)))----)))................. ( -10.30)
>DroYak_CAF1 195654 98 + 1
ACAAAGUGUAACCUUAACACACGCGGCUGUAAAGGCGAAGGACUU--UUCC--ACC-CCCCUUUACACCACCACCCCUCUUUUGUGCACCCCC----UCUCCCGACA
(((((((((.......))))....((.((((((((.(..(((...--.)))--...-).))))))))))...........)))))........----.......... ( -19.20)
>consensus
ACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUU__UUCC__ACC_CCCCCUUGCACCAAC___CCCC_UUUUAACGCCCUC___UUUUUCCGCCA
.....((((.......))))....((.(((((((..........................)))))))))...................................... ( -4.33 =  -4.59 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:55 2006