Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,760,464 – 4,760,567 |
Length | 103 |
Max. P | 0.771953 |
Location | 4,760,464 – 4,760,567 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.44 |
Mean single sequence MFE | -29.67 |
Consensus MFE | -15.31 |
Energy contribution | -17.51 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.23 |
Mean z-score | -2.01 |
Structure conservation index | 0.52 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4760464 103 + 22407834 UGUAGCAAUAUGACUUCAUGGUGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGGCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCUGCUGGCUG .(((((.((((((((((.((((...(((..(.(((((((..---.((..((((.....))))))))))))).).-----.))))))).)))))).)))).)))))...... ( -34.60) >DroSec_CAF1 208790 95 + 1 UGUAGCAAUAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGCUUGCCAAAAAUUGCCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCU-------- ...(((.((((((((((.(((((((........))))))).---.((..((((....((((....)))).))))-----....))...)))))).)))).)))-------- ( -28.10) >DroSim_CAF1 185759 95 + 1 UGUAGCAAUAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGCCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCU-------- ...(((.((((((((((.(((((((........))))))).---((((.((((....((((....)))).))))-----....)))).)))))).)))).)))-------- ( -31.40) >DroEre_CAF1 197385 98 + 1 UGUAGCAACAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGCUCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUAACUGCU----- .((((..((((((((((.(((((((........))))))).---((((.((((....((((....)))).))))-----....)))).)))))).))))..)))).----- ( -33.00) >DroAna_CAF1 206875 100 + 1 UUUAGCAACAUGACUUCAUGGCAAUAGUAUUGAUUUCCCGCUGCUGCUUGCCAAAAAUUCCUCC-GCGAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCUGGU----- .(((((.((((((((((.(((((((((((.((......)).))))).))))))...........-.....((((-----....)))).)))))).)))).))))).----- ( -31.70) >DroPer_CAF1 235285 90 + 1 UUUAGCUGCAUGACUCCAUUGCGUUAUUAUUGAUUUCCC-A---UGGCUGCCAAAAGUUCUAUA-GAGGCUAGCCUCUUCAAUGCCAGGAGGAGG---------------- ..((((.(((((....)).)))))))........(((((-.---((((...............(-((((....))))).....)))).).)))).---------------- ( -19.25) >consensus UGUAGCAACAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA___UGGUUGCCAAAAAUUGCCCCGGCAAAUGGC_____CAAUGCCAAGAGGUUGAUGUGGCU________ ...(((.((((((((((.(((((.......(.(((((((.....(((((......)))))....))))))).).........))))).)))))).)))).)))........ (-15.31 = -17.51 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:54 2006