Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,759,470 – 4,759,613 |
Length | 143 |
Max. P | 0.999916 |
Location | 4,759,470 – 4,759,581 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.17 |
Mean single sequence MFE | -31.97 |
Consensus MFE | -19.60 |
Energy contribution | -19.93 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.78 |
Structure conservation index | 0.61 |
SVM decision value | 4.53 |
SVM RNA-class probability | 0.999916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4759470 111 - 22407834 UUUUUCUUGGUGAGCAUCGCUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUUUGUUGCCCCUGUUGUUGUCGGCAACAACACCACCACCAC .......(((((((((....)))).............(((((((((((((((......)))))))))...)))))).....((((((((....)))))))).))))).... ( -36.60) >DroSec_CAF1 207781 105 - 1 UUUUUCUUGGUGAGCAUCGCUUCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUUUGUUGCCCCCGUUGUUGUCGGCAACACCACAAC------ .......(((((.........................(((((((((((((((......)))))))))...))))))(((..((....))..)))..)))))....------ ( -30.70) >DroAna_CAF1 206111 85 - 1 UUUUU-UGGGCGAGA---GUUGCUUCCUAUUUGGGCAGACAAAUGGCGUCGCAGUUUCGUGGCGCCACCAGUUGUUAUU---GUUGGUGUUG------------------- .....-...((((((---.((((..((((((((......))))))).)..))))))))))(((((((.((((....)))---).))))))).------------------- ( -28.60) >consensus UUUUUCUUGGUGAGCAUCGCUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUUUGUUGCCCC_GUUGUUGUCGGCAACA_CAC_AC______ ........((.(((........)))))..........(((((((((((((((......)))))))))...))))))................................... (-19.60 = -19.93 + 0.33)
Location | 4,759,501 – 4,759,613 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.89 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -20.15 |
Energy contribution | -20.27 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.26 |
Mean z-score | -1.83 |
Structure conservation index | 0.60 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4759501 112 - 22407834 GGUCACGUCCACAGAGCG--------AUAUUUUUCCGCAUUUUUUCUUGGUGAGCAUCGCUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUUUGUUGCCC (((.(((((......(((--------.........))).........(((..((((....))))..)))........)))...(((((((((......)))))))))......)).))). ( -32.00) >DroPse_CAF1 226431 108 - 1 GGUCACGCCCAGA---CG--------GUUUUCCUUCUCUUAUUUUCUGUGUAUGUG-UGUUGCUUCCUAUUUCGGCAGACAAAUGGCGUCGCAGUUUCGUGGCGCCACCAGUUGUUGCCA ((.(((((..(.(---((--------(..................)))).)..)))-))......))......(((((.(((.(((((((((......)))))))))....)))))))). ( -32.47) >DroEre_CAF1 196394 112 - 1 GGUCACGUCCAGAGCGCG--------AUAUUUUUCCGCAUUUUUUCUUAGUGAGCUUCGUUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUGUGUUGCCC (((((((((....(((.(--------(......))))).........(((..(((......)))..)))........)))...(((((((((......)))))))))....)))..))). ( -35.10) >DroYak_CAF1 194500 112 - 1 GGUCACGUCCAGCGAGCG--------AUAUUUUUCCGCAUUUUUUCUUGGUGAGCUUCGCUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUGGUGGCGCCACUUUUUGUUGCCC (((.(((((..(.(((((--------.........))).........(((..(((......)))..)))...)))..)))...(((((((((......)))))))))......)).))). ( -32.10) >DroAna_CAF1 206121 115 - 1 GGUCAUGCCCGCAGCUCGUUUUUCUAAUAUUUUUCUUCCUUUUUU-UGGGCGAGA---GUUGCUUCCUAUUUGGGCAGACAAAUGGCGUCGCAGUUUCGUGGCGCCACCAGUUGUUAUU- .(((.(((((((((((((((.....))).....((.(((......-.))).))))---))))).........))))))))...(((((((((......)))))))))............- ( -38.50) >DroPer_CAF1 234192 108 - 1 GGUCACGCCCAGA---CG--------GUUUUCCUUCUCUUAUUUUCUGUGUAUGUG-UGUUGCUUCCUAUUUCGGCAGACAAAUGGCGUCGCAGUUUCGUGGCGCCACCAGUUGUUGCCA ((.(((((..(.(---((--------(..................)))).)..)))-))......))......(((((.(((.(((((((((......)))))))))....)))))))). ( -32.47) >consensus GGUCACGCCCAGAG_GCG________AUAUUUUUCCGCAUUUUUUCUGGGUGAGCG_CGUUGCUUCCUAUUUUCCCAGACAAAUGGCGUCGCACUUUCGUGGCGCCACCAGUUGUUGCCC (((.............................................((.((((......)))).)).........(((((.(((((((((......)))))))))....)))))))). (-20.15 = -20.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:53 2006