| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,751,299 – 4,751,404 |
| Length | 105 |
| Max. P | 0.823987 |
| Location | 4,751,299 – 4,751,404 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -18.10 |
| Energy contribution | -19.13 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4751299 105 - 22407834 AAUUGGUCACAUUUGAGAGCUUUGAGCACCUGGAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAACUAGUGCAAGUAAACCAACCU----CAAUACGAAAAG----CAG ............(((((.((((((((((.((....)).)))))))).))...(((...(((......)))...)))............))----))).........----... ( -22.70) >DroSec_CAF1 179790 103 - 1 AAUUGGUCACAUUUGAGAGCUUUGAGCACCUGCAAAGCUGUUCAAAUGCAUAGCAAUUGUUAAUUAAAACUAGUGCAAGUAAACCAACCU----CAAUACGAAAAG----C-- ..(((((..(((((((((((((((........))))))).))))))))....(((...(((......)))...)))......)))))...----............----.-- ( -24.50) >DroSim_CAF1 175665 105 - 1 AAUUGGUCACAUUUGAGAGCUUUGAGCACCUGCAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAACUAGUGCAAGUAAACCAACCU----CAAUACGAAAAG----CAG ..(((((..(((((((((((((((........))))))).))))))))....(((...(((......)))...)))......)))))...----............----... ( -24.50) >DroEre_CAF1 188323 105 - 1 AAUUGGUCACAUUUGAGAACUUUGAGGACUUGCAAAGCUCUUCAAAGGCAUAGCAACUGUUAAUUAAAACUAGUGCAAGUAAACCGACCU----CAAUACGAAAAU----CAA ....((((...........(((((((((((.....)).))))))))).....(((...(((......)))...))).........)))).----............----... ( -21.70) >DroYak_CAF1 186367 109 - 1 AAUUGGUCUCAUUUGAGAGCUCUGAGCACUUACAAAGCUGCUCAAAUGCAUAGCAACUGUUUAUUAAAACUAGUGCAAGUAAACCAACGU----CAAUGGGAAAAUACAGCAG ..(((((..((((((((((((.((........)).)))).))))))))....(((...((((....))))...)))......)))))...----................... ( -23.70) >DroAna_CAF1 198981 111 - 1 AAUUGGAGCCAUUUGAAAGUCUUGUGCAUUUGCAUUGCAAUUCAAAAGCUAUGCAUCUGUUAAUUAAAACUACUCCAAGAAAGCCGAGUUGUUCCCACAGGGAAA--CAACCG ..((((((.(....)..(((.(((.(((..(((((.((.........)).)))))..)))....))).))).))))))......((.(((((((((...))).))--)))))) ( -26.30) >consensus AAUUGGUCACAUUUGAGAGCUUUGAGCACCUGCAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAACUAGUGCAAGUAAACCAACCU____CAAUACGAAAAG____CAG ..(((((..(((((((((((((((........))))))).))))))))....(((...(((......)))...)))......))))).......................... (-18.10 = -19.13 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:40 2006