Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 540,711 – 540,810 |
Length | 99 |
Max. P | 0.998523 |
Location | 540,711 – 540,810 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.17 |
Mean single sequence MFE | -29.15 |
Consensus MFE | -24.23 |
Energy contribution | -24.85 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.11 |
Mean z-score | -2.56 |
Structure conservation index | 0.83 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 540711 99 - 22407834 UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----ACCAA----------------CGAUCAGCUGAUCUAUCUGAUGCCUGGUCUAAUCUAACGGUUCUUUUAUUA .((((......))))((((((((..((((.......((.((..-----.)).)----------------)((((....))))..)))).))))))))..((((....))))......... ( -26.60) >DroSec_CAF1 86194 99 - 1 UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----UCCAA----------------CGAUCAGCUGAUCUCUUUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA .((((......))))(((((((.((((((.......((.((..-----.)).)----------------)((((....))))..))))))))))))).(((((....)))))........ ( -28.70) >DroSim_CAF1 88627 99 - 1 UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----UCCAA----------------CGAUCAGCUGAUCUCUUUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA .((((......))))(((((((.((((((.......((.((..-----.)).)----------------)((((....))))..))))))))))))).(((((....)))))........ ( -28.70) >DroEre_CAF1 89892 111 - 1 -GCUCUAUUCUGAGUACCAGGCGAACAGAAAUCCCAGCAAGUUCUUCUUCAAAAUGGCGUCCUUGUUGCUGAUCAGCUGAUUUGUCUUUUGCCUGGCGUAACCUGACGGUUA-------- -((((......)))).(((((((((.(((((((..((((((..(.((........)).)..))))))(((....))).))))..))))))))))))..(((((....)))))-------- ( -32.60) >consensus UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU_____UCCAA________________CGAUCAGCUGAUCUCUCUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA .((((......))))(((((((.((((((..........((........))...................((((....))))..))))))))))))).(((((....)))))........ (-24.23 = -24.85 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:57 2006