Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,749,411 – 4,749,514 |
Length | 103 |
Max. P | 0.600345 |
Location | 4,749,411 – 4,749,514 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -23.01 |
Consensus MFE | -19.20 |
Energy contribution | -19.80 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.54 |
Structure conservation index | 0.83 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4749411 103 - 22407834 AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGUGAAUGUGUUUCUUUUU------------U-UUCCGUUUUUCCGUUCUCCUGUUUU (((((((..(((.((((((...............((((..((....))..).)))((((....))))..........------------.-....)))))).)))..))))))).. ( -21.60) >DroSec_CAF1 178024 96 - 1 AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU--------------------UUUUCCGUACUCCUGUUUU ((((((..((((.(((((......((........((((..((....))..).)))((((....)))))).......)--------------------)))).))))..)))))).. ( -21.62) >DroSim_CAF1 173787 96 - 1 AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU--------------------UUUUCCGUCCUCCUGUUUU (((((((..(((.(((((......((........((((..((....))..).)))((((....)))))).......)--------------------)))).)))..))))))).. ( -19.72) >DroEre_CAF1 186392 106 - 1 AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGUUGCUGACGUUGCAUGCGAAUGUUUUU---------UUUUGUAUUU-UUGUAUUUUGCCGUUCUCCUGUUUU (((((((..(((((((((((...((((.((..(((((((.((...(((.......))).)).)).))))).---------.))))))...-.))).))))).)))..))))))).. ( -26.50) >DroYak_CAF1 184446 116 - 1 AGCAGGGCUAUGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUUUUUUUUUUUUUGUGUUUAUUGUGUUUUUCCGUUCCCCUGUUUU (((((((..(((.((((((((...((((((..((((((..((....))..).)))((((....))))...........))..)))))).....)))))))).)))..))))))).. ( -25.60) >consensus AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU____________U_UU___UUUUUCCGUUCUCCUGUUUU (((((((..(((.((((((...............((((..((....))..).)))((((....))))............................)))))).)))..))))))).. (-19.20 = -19.80 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:35 2006