Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,746,718 – 4,746,846 |
Length | 128 |
Max. P | 0.859672 |
Location | 4,746,718 – 4,746,822 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -26.03 |
Consensus MFE | -19.13 |
Energy contribution | -19.63 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.73 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4746718 104 - 22407834 AAAGGAAAGCG-----UGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCAAC-----CAACAAGACAUAUGCCC------CCCAUUCCGA ...((((.(.(-----.((((...((((((....))))))((((.((((((....)))))).))))....((.....))...-----............)))).------).).)))).. ( -25.40) >DroPse_CAF1 212125 106 - 1 -AAAGAAAGCG-----UGGCAAACAUGCAUGACAAUGCAUGACAAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCACA---CACAACAAGACAUAUGGCC-----CCCGAUCCGGG -.......(((-----((((...(((((((....)))))))....((((((....)))))).........).)))).))...---...................-----((((...)))) ( -24.00) >DroEre_CAF1 183678 105 - 1 AAAGGAAAGCG-----UGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCAAC-----CAACAGCACAUAUGUCC-----CCCAAUUCCGA ...((((.(((-----.((.....((((((....))))))((((.((((((....)))))).)))))).)))....(((...-----.....))).........-----.....)))).. ( -26.50) >DroYak_CAF1 181704 106 - 1 AAAGGAAAGCGUGGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCAGC-----CCCC----CAUUCCGAA-----ACCGAAUCCGA ...(((..((((((((.((.....((((((....))))))((((.((((((....)))))).)))))).)).)))).))...-----....----.....((..-----..))..))).. ( -30.50) >DroAna_CAF1 194502 114 - 1 AUACCAAAGCG-----UGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAG-CCCUCGCCCACUGCACUGAACACAGCAAGACAUAUGGCCAAAGAACCGGAUCAGA ...(((..(((-----.(((...(((((((....)))))))....((((((....))))))..)-))..)))...((...(((....)))..)).....)))((........))...... ( -25.80) >DroPer_CAF1 219827 106 - 1 -AAAGAAAGCG-----UGGCAAACAUGCAUGACAAUGCAUGACAAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCACA---CACAACAAGACAUAUGGCC-----CCCGAUCCGGG -.......(((-----((((...(((((((....)))))))....((((((....)))))).........).)))).))...---...................-----((((...)))) ( -24.00) >consensus AAAGGAAAGCG_____UGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCACC_____CAACAAGACAUAUGGCC_____CCCGAUUCCGA ........(((......(((...(((((((....)))))))(((.((((((....)))))).))).....)))...)))......................................... (-19.13 = -19.63 + 0.50)
Location | 4,746,747 – 4,746,846 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -22.87 |
Energy contribution | -23.37 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.85 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4746747 99 + 22407834 UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUAGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCCUUUCCGUGCCUUUGCGAUCCUUUCCGU---------- .((((.(((((.((((((.((((((....)))))).))))((((((....))))))...................)).)))))))))............---------- ( -27.20) >DroPse_CAF1 212157 99 + 1 UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUUGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCUUU--CAUUCCUUCCCUCUUUUUUUCGU--------GU ...((((((((((.(((..((((((....))))))..)))((((((....)))))).)))))).))))......--.......................--------.. ( -24.20) >DroSec_CAF1 175442 99 + 1 UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUAGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCCUUUCCGUGCCUUUGCAAUUUUUUCCGC---------- (((((.(((((.((((((.((((((....)))))).))))((((((....))))))...................)).))))))))))...........---------- ( -27.90) >DroSim_CAF1 171140 99 + 1 UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUAGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCCUUUCCGUGCCUUUGCCAUCCUUUCCGC---------- .......(((((((((((.((((((....)))))).)))(((((((....))))))).....((((..........))))))))))))...........---------- ( -26.70) >DroAna_CAF1 194542 108 + 1 UGCAGUGGGCGAGGG-CUUAAGUAAUUCAUUACUUUAGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUGGUAUCCUUGCCGCUUCCCUCCAGUUCCAGGCUCUGACU ..(((.(((((((((-((.((((((....)))))).)))(((((((....)))))))..(((((.....))))).))))))).....(((........)))).)))... ( -32.00) >DroPer_CAF1 219859 99 + 1 UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUUGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCUUU--CAUUCCUUCCCUCUUUUUUUCGU--------GU ...((((((((((.(((..((((((....))))))..)))((((((....)))))).)))))).))))......--.......................--------.. ( -24.20) >consensus UGCAGUGGGCGAGGGACUUAAGUAAUUCAUUACUUUAGUCAUGCAUUGUCAUGCAUGUUUGCCACGCUUUCCUUUCCGUGCCUUUGCCAUCCUUUCCGU__________ ...((((((((((.((((.((((((....)))))).))))((((((....)))))).)))))).))))......................................... (-22.87 = -23.37 + 0.50)
Location | 4,746,747 – 4,746,846 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -20.85 |
Energy contribution | -21.35 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 0.79 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.803934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4746747 99 - 22407834 ----------ACGGAAAGGAUCGCAAAGGCACGGAAAGGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ----------..((..(((........(.((((..........)))).)...(((((((....)))))))(((.((((((....)))))).))).)))..))....... ( -25.50) >DroPse_CAF1 212157 99 - 1 AC--------ACGAAAAAAAGAGGGAAGGAAUG--AAAGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACAAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ..--------..........((((((.......--.................(((((((....)))))))....((((((....))))))...))))))((.....)). ( -23.80) >DroSec_CAF1 175442 99 - 1 ----------GCGGAAAAAAUUGCAAAGGCACGGAAAGGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ----------((((.......(((....)))......((...(((.((.....((((((....))))))((((.((((((....)))))).)))))).))))).)))). ( -28.60) >DroSim_CAF1 171140 99 - 1 ----------GCGGAAAGGAUGGCAAAGGCACGGAAAGGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ----------((((........((....)).......((...(((.((.....((((((....))))))((((.((((((....)))))).)))))).))))).)))). ( -28.00) >DroAna_CAF1 194542 108 - 1 AGUCAGAGCCUGGAACUGGAGGGAAGCGGCAAGGAUACCAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAG-CCCUCGCCCACUGCA ........(((........)))...((((...((...))...(((.(((...(((((((....)))))))....((((((....))))))..)-))..)))...)))). ( -28.10) >DroPer_CAF1 219859 99 - 1 AC--------ACGAAAAAAAGAGGGAAGGAAUG--AAAGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACAAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ..--------..........((((((.......--.................(((((((....)))))))....((((((....))))))...))))))((.....)). ( -23.80) >consensus __________ACGAAAAAAAGAGCAAAGGCACGGAAAGGAAAGCGUGGCAAACAUGCAUGACAAUGCAUGACUAAAGUAAUGAAUUACUUAAGUCCCUCGCCCACUGCA ..........................................(((((((...(((((((....)))))))(((.((((((....)))))).))).....).)))).)). (-20.85 = -21.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:32 2006