Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,744,759 – 4,744,859 |
Length | 100 |
Max. P | 0.939252 |
Location | 4,744,759 – 4,744,859 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.17 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -17.16 |
Energy contribution | -17.72 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.52 |
Structure conservation index | 0.69 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4744759 100 - 22407834 ---UCAUCGCUC----------CUUCGAACCAAACCGCUGCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.....((((----------(((((...((......))...)))))((((...(((((-(((((...(((((....)))))...))))))))))....))))..)))).... ( -27.80) >DroSec_CAF1 173447 88 - 1 ---UCAU----------------------CCAAGCCGCUGCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---....----------------------.........(((((...((((((...(((((-(((((...(((((....)))))...))))))))))))))))....)))))... ( -25.10) >DroSim_CAF1 169100 103 - 1 AGCUCAUCGCCC----------CUUCGAACCAAACCGCUCCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA .((((.......----------(((((................)))))((((...(((((-(((((...(((((....)))))...))))))))))....))))..)))).... ( -27.89) >DroEre_CAF1 181591 104 - 1 ---UCAUCGCACC---CACCCC----GAACUAAACCGCUGCUCAGAAGUUAAAAUACUUCGGGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.....(((((---(....(----(........)).......(((((......))))))))))).....(((...((((....)))).((((......))))....)))... ( -23.70) >DroYak_CAF1 179657 110 - 1 ---UCAUCGCCGUCGCCGCCCCUUUGGAACCAAACCGCUGCUCAGAAGUUGAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---..............((...((((....))))..))(((((...((((((...(((((-(((((...(((((....)))))...))))))))))))))))....)))))... ( -28.30) >DroAna_CAF1 192794 99 - 1 ---CCGCCAUUC------UCCCGCUAC-----AACCAUUACUUUCCAGUUAAAAUACUUA-GGUGAAAUUUAGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.........------....(((..-----........((((..((((((...(((((-((((.......((....)).......))))))))))))))).))))))).... ( -16.14) >consensus ___UCAUCGCCC___________UU_GAACCAAACCGCUGCUCCGAAGUUAAAAUACUUA_GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ......................................(((((...((((((...(((((.(((((...(((((....)))))...))))))))))))))))....)))))... (-17.16 = -17.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:29 2006