Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,744,459 – 4,744,555 |
Length | 96 |
Max. P | 0.535268 |
Location | 4,744,459 – 4,744,555 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -19.64 |
Energy contribution | -18.25 |
Covariance contribution | -1.39 |
Combinations/Pair | 1.38 |
Mean z-score | -1.76 |
Structure conservation index | 0.63 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4744459 96 + 22407834 GCAC---CUUCAAGUUAAAGGC-----AAGUUUACCUCCUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG ....---......(((((.(((-----.(((((.(((((....))(((.......)))..))))))))..)))(((((.....)))))........)))))... ( -27.10) >DroPse_CAF1 209374 103 + 1 GCGCC-CUUCAGAGUCAGGGACGUGGAGAAAUUCCUGGCUCAUGGACGAUUAACUCGCUUAGGAACCUGAGCCGUGGCACUUAGUUGCAUUUUUCAUUAGCAUG ((...-.....((((((((((..(....)..))))))))))(((((.(((......((((((....)))))).(..((.....))..)))).)))))..))... ( -31.40) >DroSim_CAF1 168798 99 + 1 GCUCCCCCUUAAAGUUAAAGGC-----AAGUUUACCUCCUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG .............(((((.(((-----.(((((.(((((....))(((.......)))..))))))))..)))(((((.....)))))........)))))... ( -27.10) >DroEre_CAF1 181278 96 + 1 GCAC---CUCAAAGUUAAAGGC-----AAGUUUCCCGACUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUAGCUGCAUAUUUCAUUAGCAUG ....---......(((((.(((-----.(((((((.......((((((.......)))))))))))))..)))(((((.....)))))........)))))... ( -29.91) >DroYak_CAF1 179346 96 + 1 GCAC---CUGAAAGUUGCAGGC-----AAGUUUCGCGACUCAUGGACGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG ((..---.(((((..(((((.(-----((((.(((((......((.........))((((((....))))))))))).))))).)))))..)))))...))... ( -41.30) >DroPer_CAF1 217079 103 + 1 GCGCC-CUUUAGAGUCAGGGACGUGGAGAAAUUCCUGGCUCAUGGACGAUUAACUCGCUUAGGAACCUGAGCCGUGGCACUUUGUUGCAUUUUUCAUUAGCAUG ((...-.....((((((((((..(....)..))))))))))(((((.(((......((((((....)))))).(..((.....))..)))).)))))..))... ( -31.70) >consensus GCAC___CUUAAAGUUAAAGGC_____AAGUUUCCCGACUCAUGGACGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG ((.....(((.......))).....................(((((..........((((((....)))))).(((((.....)))))....)))))..))... (-19.64 = -18.25 + -1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:28 2006