Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,725,802 – 4,725,910 |
Length | 108 |
Max. P | 0.573727 |
Location | 4,725,802 – 4,725,910 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -27.85 |
Consensus MFE | -11.91 |
Energy contribution | -12.88 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.38 |
Mean z-score | -2.04 |
Structure conservation index | 0.43 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4725802 108 + 22407834 UUCCUUUAAUGCCAGGACCUCAUUAUGAGGCCAAU------UAAAGCUCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC ...(((((((....((.((((.....)))))).))------)))))....(((.(((((((((((....((.....)).(((((...))------)))...)))))))))))..)))... ( -33.30) >DroSec_CAF1 154207 114 + 1 UUCCUUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUAAAGACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC ...(((((((..((((.(.((.....)).)))...))..)))))))....(((.(((((((((((....((.....)).(((((...))------)))...)))))))))))..)))... ( -27.90) >DroSim_CAF1 150198 114 + 1 UUCCCUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUGAAUACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC .((((((..((.(((((((((((((..(......)..))).)))....((((......))))..))))))).)).....(((((...))------))).......))))))......... ( -29.10) >DroEre_CAF1 162186 114 + 1 GUCCUUUUAUGCCAGGACCUCAUUACUAUGCCAAUUGUAAUUAAAGCCCAGAAUGUCCUUUAAGGGUCCUGUCAUUCGAGUGACUAUGU------CACAAACUUCAAGGAGCUUUCCCUC .(((((..(((.((((((((..((((.((....)).))))((((((..(.....)..)))))))))))))).)))....(((((...))------))).......))))).......... ( -28.50) >DroYak_CAF1 160686 108 + 1 GCUCCUUAAUGCCGGGACCUCAUUAA------AAUUGUAAUUAAAGCCCAAAAUGUCCUUUAAGGGUCCUGUCAAUCGACUGACCAUGU------CACAAACUUCAAGGGGCUUUUCGUC (((((((..((.((((((((((....------...))...((((((..(.....)..)))))))))))))).))...(((.......))------).........)))))))........ ( -28.40) >DroAna_CAF1 171914 110 + 1 -------GGUGCCAGUA-CUCAUUAUUAUGUCAAUUAUAAUUAAAGCAUAGAGUGUCCUUUCGCUUUUCUGUCAAUCGUACGUACGUGUCCUGGCGGCAACCUUCAAGUCAGUUUUUU-- -------((((((.(((-(.....((((((.....))))))....(((.((((((......))))))..))).....))))......((....))))).)))................-- ( -19.90) >consensus UUCCUUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUAAAGCCCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU______CACAAACUUCAAGGGGCUUUUCCUC .((((((..((.((((((((....................((((((..(.....)..)))))))))))))).))............(((.......)))......))))))......... (-11.91 = -12.88 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:21 2006