Locus 1719

Sequence ID 2L_DroMel_CAF1
Location 4,724,299 – 4,724,397
Length 98
Max. P 0.778097
window2755

overview

Window 5

Location 4,724,299 – 4,724,397
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.68
Mean single sequence MFE -35.58
Consensus MFE -24.50
Energy contribution -25.53
Covariance contribution 1.03
Combinations/Pair 1.24
Mean z-score -1.74
Structure conservation index 0.69
SVM decision value 0.55
SVM RNA-class probability 0.778097
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4724299 98 + 22407834
AAUGUCCUGGGCACUCACUAGCCAGCUGAUGCUGGUCGGAUGGCCAACAGAUUCCGGCAGACACAGUGGGGCAGGUCCAGGCCAAAUCAUUUUGCAUG
..((.(((((((.((((((...((((....))))((((((((.....))...))))))......))))))....))))))).)).............. ( -36.00)
>DroSec_CAF1 152651 98 + 1
AAUGUCCUGGGCACUCACUAGCCAGCUGAUGCUGGUCGGUUGGCCAGCAGAUUCCGGCAUACACAGUGGGUCAGGUCCAGGCAAAACAAUUUUCCAUG
..((.((((((((((((((.....((((.((((((((....)))))))).....))))......)))))))...)))))))))............... ( -37.60)
>DroSim_CAF1 148645 98 + 1
AAUGUCCUGGGCACUCACUAGCCAGCUGAUGCUGGUCGGUUGGCCAGCAGAUUCCGGCAGAAACAGUGGGGCAGGUCCAGGCAAAACCAUUUUCCAUG
..((.(((((((.((((((.....((((.((((((((....)))))))).....))))......))))))....)))))))))............... ( -38.00)
>DroEre_CAF1 160615 98 + 1
AAUGUCCUGGGCACUUACUAGCCAGCUGAUGCGGGUCUGCUGGCCAGCAGACUCCGGCAGACACAGUGGGGCAGGUGCAGGGAAAACCAUUCUGCCCG
........(((((..((((.(((.((((.((((((((((((....))))))).)).)))....))))..))).))))..((.....))....))))). ( -41.80)
>DroYak_CAF1 159037 98 + 1
AAUGUCCUGGGCACUUACUAGCCAGCUGAUGCUGGUCGGAUGGCCAGCAGAAUCCGCCAGACACAGUGGGGCAGCUCCAUUCUAAACCACUUUGCCUA
.......((((((.......((((((....)))))).((((((..(((....(((((........)))))...)))))))))..........)))))) ( -31.60)
>DroPer_CAF1 175699 93 + 1
AAUGUCCUGGGCACUUAAGAGCCAGCUGAUGCUGGUUAGCUGGCCAGCGAAAUGGUUUCCAUACAAUGGGGCACGUCUUUGUGA-----GUUUGUUCA
........((((((((..(.((((((((((....))))))))))).((((((((..((((((...))))))..))).)))))))-----))..)))). ( -28.50)
>consensus
AAUGUCCUGGGCACUCACUAGCCAGCUGAUGCUGGUCGGAUGGCCAGCAGAUUCCGGCAGACACAGUGGGGCAGGUCCAGGCAAAACCAUUUUGCAUG
.....(((((((.((((((.((((((((((....))))))))))........((.....))...))))))....)))))))................. (-24.50 = -25.53 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:20 2006