Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,723,008 – 4,723,104 |
Length | 96 |
Max. P | 0.729036 |
Location | 4,723,008 – 4,723,104 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -20.41 |
Energy contribution | -20.25 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4723008 96 + 22407834 GCCAAGUGGCAAAAUGGCAGCAUCACGAGCACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGACAGGG---GAAAACCCCGG-CUUAUCGUUGGGU---- ((((..(....)..)))).((.......)).((((((((..(((((((...)))))))......))))))))---......(((((-(.....)))))).---- ( -31.40) >DroSec_CAF1 151355 96 + 1 GCCAAGUGGCAAAAUGGCAGCAUCACGAGCACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGACAGGG---GAAAACCCCGG-CUUAUCGUUGGGU---- ((((..(....)..)))).((.......)).((((((((..(((((((...)))))))......))))))))---......(((((-(.....)))))).---- ( -31.40) >DroSim_CAF1 147407 96 + 1 GCCAAGUGGCAAAAUGGCAGCAUCACGAGCACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGACAGGG---GAAAACCCCGG-CUUAUCGUUGGGU---- ((((..(....)..)))).((.......)).((((((((..(((((((...)))))))......))))))))---......(((((-(.....)))))).---- ( -31.40) >DroEre_CAF1 159138 95 + 1 GCCAAGUGGCAGAAUGGCAGCAUCACGAGGACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGGCAGGG--AGAA--CCCCGG-CUUAUCUUUGGGU---- ((((((..(..((.((((((..((.....))..))))))))(((((((...))))))).)..)))))).(((--....--.))).(-((((....)))))---- ( -30.80) >DroYak_CAF1 157717 97 + 1 GCCAAGUGGCAGAAUGGCAGCAUCACGAGGACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGGCAGGG--AGAAAGACCCGG-CUUAUCUUUGGGU---- ((((((..(..((.((((((..((.....))..))))))))(((((((...))))))).)..)))))).(((--.......))).(-((((....)))))---- ( -30.10) >DroPer_CAF1 174503 88 + 1 GU---------------CAGCUUCCUAAGAAGCCU-UCUUCGUGUUUAUUUUAAACGCACUUUCAGGCAGCUUCAGAUAAGCUCAGUACUCGCGGAGAGUACAC ((---------------(.(((((....)))))..-.....(((((((...))))))).......)))(((((.....)))))..((((((.....)))))).. ( -24.70) >consensus GCCAAGUGGCAAAAUGGCAGCAUCACGAGCACCCUGUCAUCGUGUUUAUUUUAAACGCACUGUUUGACAGGG___GAAAACCCCGG_CUUAUCGUUGGGU____ ((((..........)))).............((((((((..(((((((...)))))))......)))))))).........(((((........)))))..... (-20.41 = -20.25 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:19 2006