Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,718,704 – 4,718,797 |
Length | 93 |
Max. P | 0.642781 |
Location | 4,718,704 – 4,718,797 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.86 |
Mean single sequence MFE | -22.22 |
Consensus MFE | -7.93 |
Energy contribution | -9.93 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.36 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4718704 93 + 22407834 UGCAGCGAAUUUAC--------AACGCACCCGCGA--------CCAACCGUGGGAACAAGCAAACAAUAUCUGCAGUGCCAUGAAAAUGCCAUCAGCGCAGAAUAAGCA (((.(((.......--------..))).((((((.--------.....)))))).....))).......(((((.(((.(((....))).)))....)))))....... ( -26.30) >DroPse_CAF1 172466 91 + 1 UGCAGCGAAUUUAU--------GGCCAUCUCCUCC--------CCAUCCCCAUCAACAAACAA--AAUUUCUGCAGUGCCAGGCAAAUGCCAUCACCGCAGAAUAAGCU ...(((((....((--------((...........--------)))).....)).........--...((((((.(((...(((....)))..))).))))))...))) ( -19.00) >DroEre_CAF1 154735 90 + 1 UGCAGCAAAUUUAC--------AACGCACCCGCGC--------CCAACCGUGGGAACAAACAA---AUAUCUGCAGUGCCAUGAAAAUGCCAUCAGAGCAGAAUAAGCA ..............--------...((.((((((.--------.....)))))).........---...(((((.(((.(((....))).)))....)))))....)). ( -22.70) >DroYak_CAF1 153369 90 + 1 UGCAGUAAAUUUAC--------AACGCACCCGCGC--------CCAACCGUGGGAACAAACAA---AUAUCUGCAGUGCCAUGAAAAUGCCAUCAGCGCAGAAUAAGCA ....(((....)))--------...((.((((((.--------.....)))))).........---...(((((.(((.(((....))).)))....)))))....)). ( -22.80) >DroAna_CAF1 164238 106 + 1 UGCAGCGAAUUUAUGGGCCCUCUCCGCAUCUGCAACAGCCGCACAAGCCAUGGAAACAAACAA---AUUUCUGCAGUGCCAUGAAAAUGCCAUCAACGCAGAAUAAGCA (((.((........(((.....)))((....))....)).)))...((..((....)).....---..((((((.(((.(((....))).)))....))))))...)). ( -23.50) >DroPer_CAF1 169844 91 + 1 UGCAGCGAAUUUAU--------GGCCAUCUCCUCC--------CCAUCCCCAUCAACAAACAA--AAUUUCUGCAGUGCCAGGCAAAUGCCAUCACCGCAGAAUAAGCU ...(((((....((--------((...........--------)))).....)).........--...((((((.(((...(((....)))..))).))))))...))) ( -19.00) >consensus UGCAGCGAAUUUAC________AACGCACCCGCGC________CCAACCGUGGGAACAAACAA___AUAUCUGCAGUGCCAUGAAAAUGCCAUCAGCGCAGAAUAAGCA .((......................((....))....................................(((((.(((.(((....))).)))....)))))....)). ( -7.93 = -9.93 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:16 2006