Locus 1715

Sequence ID 2L_DroMel_CAF1
Location 4,717,509 – 4,717,605
Length 96
Max. P 0.545052
window2750

overview

Window 0

Location 4,717,509 – 4,717,605
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 85.08
Mean single sequence MFE -24.30
Consensus MFE -15.78
Energy contribution -17.12
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.99
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.545052
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4717509 96 + 22407834
AAUCAUAUAAAUUUCAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUACCGAUUGCGGCAUGCCACU---GCA-----GUUC--CAUAUU
.............................((.((((...(((((((((.(((...(((......))).))).))))))))).)---)))-----))..--...... ( -27.10)
>DroPse_CAF1 171142 99 + 1
AUUCAUAUAAAUUUCAUUUUACAAUUUUCGCAUGCAAUUUGGCGUGCCACAAAUGUGGCCCACAC--AAUGCGGCAUUCCAGUUCUGCA-----AUAUCCCACACC
................................((((..((((.(((((.((..((((.....)))--).)).))))).))))...))))-----............ ( -22.10)
>DroSim_CAF1 141930 96 + 1
AAUCAUAUAAAUUUCAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUGCCGAUUGCGGCAUGCCACU---GCA-----GUUU--CAUAUG
.............................((.((((...(((((((((.(((...((((....)))).))).))))))))).)---)))-----))..--...... ( -30.00)
>DroEre_CAF1 153574 96 + 1
AAUCAUAUAAAUUUCAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCUCAUACCGACUGCGGCAUGCCACU---CCA-----GUAC--CAUAUU
.......................................(((((((((.((....(((......)))..)).)))))))))..---...-----....--...... ( -21.90)
>DroYak_CAF1 152157 96 + 1
AAUCAUAUAAAUUUCAUUUCGCAAUUUCCGCAUGCAAUUUGGCGUGCCGCAAAUGCGGGCCAUACCGACUGCGGCAUGCCACU---CCA-----GUUC--CAUAUU
....................((.......))(((.((((((((((((((((....(((......)))..))))))))))))..---..)-----))).--)))... ( -30.30)
>DroAna_CAF1 163130 99 + 1
AUUCAUAUAAAUUUCAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGUGUCCCACAC--AAUGCCGCAUUCCAUU---CCAUCUGAGUUC--UAUAAU
.....((((...((((.............((((((......))))))......((((.....)))--)...............---.....))))...--)))).. ( -14.40)
>consensus
AAUCAUAUAAAUUUCAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUACCGAAUGCGGCAUGCCACU___CCA_____GUUC__CAUAUU
.......................................(((((((((.((....(((......)))..)).)))))))))......................... (-15.78 = -17.12 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:15 2006