Locus 1712

Sequence ID 2L_DroMel_CAF1
Location 4,703,842 – 4,703,933
Length 91
Max. P 0.519844
window2746

overview

Window 6

Location 4,703,842 – 4,703,933
Length 91
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.39
Mean single sequence MFE -24.92
Consensus MFE -19.58
Energy contribution -19.42
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.42
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.519844
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4703842 91 - 22407834
AAGCAGCGAUGCCGGCGACAAAAUGGCGCGACGCCUAUUAAAGGAUUUCAUCU-------CAUG------------CCCGUCAACACCGUCGUCCCGUCGUCUGUUGCCC
..(((((((((.(((.(((...((((.(.((((..(((....((((...))))-------.)))------------..))))..).)))).)))))).)))).))))).. ( -25.80)
>DroSec_CAF1 133109 89 - 1
AAGCAGCGAUGCCGGCGACAAAAUGGCGCGCCGUCUAUUAAAGGAUUUCAUCU-------CAUC------------CCCGUCAACACCGUCGUCC--UCGUCUGUUGCCC
..(((((((((..((((((...((((....))))........((((.......-------.)))------------)...........)))))).--.)))).))))).. ( -25.50)
>DroSim_CAF1 128232 89 - 1
AAGCAGCGAUGCCGGCGACAAAAUGGCGCGCCGUCUAUUAAAGGAUUUCAUCU-------CAUC------------CCCGUCAACACGGUCGUCC--UCGUCUGUUGCCC
..(((((((((..((((((...((((....))))........((((.......-------.)))------------).(((....))))))))).--.)))).))))).. ( -25.50)
>DroEre_CAF1 139683 108 - 1
AAGCAACGAUGCCGGCGACAAAAUGCCGCGUCGCCUAUUAAAGGAUCUCAUCCCUAUCCCCAUCCCCAUCCCCAUCCCCAUCUUCAUCGUCGUCC--UCGUCUGCUACCC
.((((((((((..((((((..........))))))......(((........))).............................))))))((...--.))..)))).... ( -20.90)
>DroYak_CAF1 138323 101 - 1
AAGCAGCGAUGCCGGCGACAAAAUGGCGCGCCGCCUAUUAAAGGAUUUCAUCU-------CAUCCCCAUUCCCAUUCCCAUUCUCAUCGUCGUCC--UCGUCUGCUACCC
.((((((((.(.((((((......((((...)))).......((((.......-------.)))).....................)))))).).--))).))))).... ( -26.90)
>consensus
AAGCAGCGAUGCCGGCGACAAAAUGGCGCGCCGCCUAUUAAAGGAUUUCAUCU_______CAUC____________CCCGUCAACACCGUCGUCC__UCGUCUGUUGCCC
.((((((((....((((((.....((((...)))).......((((...))))...................................))))))...))).))))).... (-19.58 = -19.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:11 2006