| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,696,459 – 4,696,552 |
| Length | 93 |
| Max. P | 0.541947 |
| Location | 4,696,459 – 4,696,552 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 92.39 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -24.25 |
| Energy contribution | -24.86 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4696459 93 - 22407834 UUUGAGCCUAUGG-----AGCCCAUGGUGCUUCACGGCU-GUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCUCCUGGCA .....(((...((-----(((..............(.((-((((((((....))).........))))))).).(((((.....)))))))))).))). ( -30.90) >DroSec_CAF1 125962 93 - 1 UUUGAGCCUUUGG-----AGCCCAUGGUGCUUCACGGCU-GUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA .....(((..(((-----((((....).)))))).((((-((((((((....))).........))))))(((((.(.....).))))))))...))). ( -29.70) >DroSim_CAF1 118854 93 - 1 UUUGAGCCUUUGG-----AGCCCAUGGUGCUUCACGGCU-GUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA .....(((..(((-----((((....).)))))).((((-((((((((....))).........))))))(((((.(.....).))))))))...))). ( -29.70) >DroEre_CAF1 129788 94 - 1 UUUGAGCCUAUGG-----AGCCCAUGGUGCUCCGCGGCUAGUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA .....(((...((-----((((....).)))))(((((...(((((((...(((.................))).)))))))....)))))....))). ( -34.03) >DroYak_CAF1 130583 94 - 1 UUUGAGCCUAUGG-----AGCCCAUGGUGCUUCACGGCUUGUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA .............-----.(((.((((.((......((((((((((((....))).........))))))))).(((((.....)))))))))))))). ( -30.70) >DroAna_CAF1 143129 95 - 1 UUU----UUAUGGUUUCCCACCCAUGGUAGUUCACGGCUUGUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA ...----...(((....))).((((((.........((((((((((((....))).........))))))))).(((((.....)))))..)))))).. ( -27.50) >consensus UUUGAGCCUAUGG_____AGCCCAUGGUGCUUCACGGCU_GUGUUUGCAUUUGCAUUUCAUUAAAACACAGGCAGGUAAACAAGUUGCCGCCCAUGGCA ...((((((((((........)))))).))))...(((...(((((((...(((.................))).)))))))....)))(((...))). (-24.25 = -24.86 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:10 2006