Locus 1710

Sequence ID 2L_DroMel_CAF1
Location 4,695,914 – 4,696,012
Length 98
Max. P 0.877221
window2744

overview

Window 4

Location 4,695,914 – 4,696,012
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 92.72
Mean single sequence MFE -32.75
Consensus MFE -28.26
Energy contribution -28.18
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.86
SVM decision value 0.90
SVM RNA-class probability 0.877221
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4695914 98 + 22407834
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGAGACGCUUUUAUUGUUUGCCCACGGACAUGGCGUCAUUAUCUGCUGGCAUUUUUGUGCGCUCC
(((((.(((.....))).))))).(((.....))).((((((.....((((((....)))))).)))))).......((..((((....))))))... ( -27.30)
>DroSec_CAF1 125437 98 + 1
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGCGACGCUUUUAUUGUUUGCCCACGGACAUGGCGUCAUUAUCUGCUGGCAUUUCUGUGCCCGCC
(((((.(((.....))).)))))((((.....))))((((((.....((((((....)))))).)))))).......((.(((((....))))).)). ( -36.80)
>DroSim_CAF1 118330 98 + 1
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGCUACGCUUUUAUUGUUUGCCCACGGACAUGGCGUCAUUAUCUGCUGGCAUUUCUGUGCCCGCC
(((((.(((.....))).)))))((((.....)))).(((((.....((((((....)))))).)))))........((.(((((....))))).)). ( -31.70)
>DroEre_CAF1 129259 98 + 1
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGCGACGCUUUUAUUGUUUGCCCACGGACAUGGCGUCAUUAUCUUCGGGCAUUUCCAUGCCCUCC
(((((.(((.....))).)))))((((.....))))((((((.....((((((....)))))).)))))).........((((((....))))))... ( -36.80)
>DroYak_CAF1 130066 98 + 1
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGCGACGCUUUUAUUGUUUGCCCACGGACAUGGCGUUAUUAUCUCCGGGCAUUCUCAUGCCCUCC
(((((.(((.....))).)))))((((.....))))((((((.....((((((....)))))).)))))).........((((((....))))))... ( -34.20)
>DroAna_CAF1 142643 97 + 1
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGCUGACGCUUUUAUUGUUUGCCCAUGGACAUGGCGUCAUUAUCUU-UGGUAUUUUUAUGCCUUCC
(((((.(((.....))).)))))(((......)))(((((((.....(((((......))))).))))))).......-.(((((....))))).... ( -29.70)
>consensus
GGUCAGGUCCGUCUGAUAUGGCCGCCUAAUUUGGGCGACGCUUUUAUUGUUUGCCCACGGACAUGGCGUCAUUAUCUGCUGGCAUUUCUAUGCCCUCC
(((((.(((.....))).)))))((((.....))))((((((.....((((((....)))))).))))))..........(((((....))))).... (-28.26 = -28.18 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:09 2006