Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,683,818 – 4,683,932 |
Length | 114 |
Max. P | 0.796090 |
Location | 4,683,818 – 4,683,932 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 71.73 |
Mean single sequence MFE | -31.98 |
Consensus MFE | -17.91 |
Energy contribution | -18.42 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.29 |
Mean z-score | -1.57 |
Structure conservation index | 0.56 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4683818 114 + 22407834 UCAUGAGACUGUUUGUGCUCUGGCUCCUGAUCCAUUUCCUGGACCUUUUCAAUUUCGAUGGUGAGGAGAUCGAGAGCCUUGCGCUUACUGCGCUCCCAUUGCUGGAGAAGCUUC ....(((...((..((((...(((((.(((((....((((.(.((...((......)).))).))))))))).)))))..))))..))....))).....(((.....)))... ( -35.20) >DroVir_CAF1 130526 90 + 1 ------------------------UCCUGAUCCAUGGUCUGCACCUUCUCGAUCUCGAUGGUGAGCAAAUCCAGGGCCUUGCGUUUGGUGCGCUCCCAACGCUGCAGCAUCUUU ------------------------...........((((((((.(...(((....)))(((.((((....(((((((...)).)))))...)))))))..).))))).)))... ( -23.60) >DroGri_CAF1 116221 90 + 1 ------------------------UCCUGAUCCAUGGCCUGCACCUUCUCGAUCUCAAUGGUAAGCAGAUCGAGAGCCUUCCGCUUGGAGCGUUCCCAACGUUGCAGCAUCUUC ------------------------...........(((........((((((((((........).))))))))))))....(((.(.(((((.....))))).))))...... ( -23.70) >DroEre_CAF1 117177 108 + 1 UCAUGAG------CCUGCUCUUGCUCCUGAUCCAUUUCCUGCACCUUCUCGAUCUCAGUUGUUAGGAGAUCGAGAGCCUUGCGCUUACUGCGCUCCCAUCGCUGUAGAAGCCUC (((.(((------(........)))).)))..........(((..(((((((((((.........)))))))))))...)))((((.((((((.......)).))))))))... ( -34.60) >DroYak_CAF1 117825 114 + 1 UCAUGAGUCGGCUCCUGCUCUUGCUCCUGAUCCAUUUCCUGCACCUUCUCAAUCUCGAUGGUCAGGAGGUCGAGAGCCUUGCGCUUACUGCGCUCCCAUUGCUGCAGAAGCUUC .........((((.((((....((((.(((((....(((((.(((.((........)).))))))))))))).))))...((((.....))))..........)))).)))).. ( -38.70) >DroMoj_CAF1 138238 90 + 1 ------------------------UCCUGGUCCAUGGUCUGCAGCUUCUCGAUCUCGAGCAUGAGCAGGUCGAGCGCCUUGCGCUUGCUGCGCUCCCAACGCUGCAGCAUCUUG ------------------------........((.((((((((((..((((....))))...((((.((.(((((((...)))))))))..)))).....))))))).))).)) ( -36.10) >consensus ________________________UCCUGAUCCAUGGCCUGCACCUUCUCGAUCUCGAUGGUGAGCAGAUCGAGAGCCUUGCGCUUACUGCGCUCCCAACGCUGCAGAAGCUUC ......................................(((((.((((((((((((........).))))))))))....((((.....)))).......).)))))....... (-17.91 = -18.42 + 0.50)
Location | 4,683,818 – 4,683,932 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 71.73 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -16.68 |
Energy contribution | -18.02 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.69 |
Structure conservation index | 0.49 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4683818 114 - 22407834 GAAGCUUCUCCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUCACCAUCGAAAUUGAAAAGGUCCAGGAAAUGGAUCAGGAGCCAGAGCACAAACAGUCUCAUGA ...((((.((((....)))).((((.....))))..(((((..((((((((.(((.(((....)))...)))..))))....))))..))))).))))................ ( -35.30) >DroVir_CAF1 130526 90 - 1 AAAGAUGCUGCAGCGUUGGGAGCGCACCAAACGCAAGGCCCUGGAUUUGCUCACCAUCGAGAUCGAGAAGGUGCAGACCAUGGAUCAGGA------------------------ ...((((((...(((((((.......)).)))))..)))(((((.(((((..(((.(((....)))...))))))))))).)))))....------------------------ ( -28.20) >DroGri_CAF1 116221 90 - 1 GAAGAUGCUGCAACGUUGGGAACGCUCCAAGCGGAAGGCUCUCGAUCUGCUUACCAUUGAGAUCGAGAAGGUGCAGGCCAUGGAUCAGGA------------------------ .......(((((.((((.(((....))).))))......(((((((((.(........))))))))))...))))).((........)).------------------------ ( -27.10) >DroEre_CAF1 117177 108 - 1 GAGGCUUCUACAGCGAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUAACAACUGAGAUCGAGAAGGUGCAGGAAAUGGAUCAGGAGCAAGAGCAGG------CUCAUGA ...((((((............((((.....)))).....((((((((((.........)))))))))).(((.((.....)).)))))))))..(((....------))).... ( -35.70) >DroYak_CAF1 117825 114 - 1 GAAGCUUCUGCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGACCUCCUGACCAUCGAGAUUGAGAAGGUGCAGGAAAUGGAUCAGGAGCAAGAGCAGGAGCCGACUCAUGA ...((((((((..........((((.....))))...((((..((((((((((((.((........)).))).)))))...)).))..))))....)))))))).......... ( -44.20) >DroMoj_CAF1 138238 90 - 1 CAAGAUGCUGCAGCGUUGGGAGCGCAGCAAGCGCAAGGCGCUCGACCUGCUCAUGCUCGAGAUCGAGAAGCUGCAGACCAUGGACCAGGA------------------------ .......(((((((((.((((((((.((....))...))))))..)).)).....((((....))))..))))))).((........)).------------------------ ( -34.10) >consensus GAAGAUGCUGCAGCGAUGGGAGCGCAGCAAGCGCAAGGCUCUCGAUCUCCUCACCAUCGAGAUCGAGAAGGUGCAGGAAAUGGAUCAGGA________________________ .......(((((.(.......((((.....))))......((((((((.(........)))))))))..).)))))...................................... (-16.68 = -18.02 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:04 2006