Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,676,596 – 4,676,695 |
Length | 99 |
Max. P | 0.995693 |
Location | 4,676,596 – 4,676,695 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.44 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -28.10 |
Energy contribution | -28.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.93 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4676596 99 + 22407834 CCGCCCAAAUCAAUGGCUAAUGAAGCGCACGGAGCGCAGGUGAUUGCAGCCGAAUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAGCAGCUU ((((((......(((((.......((((.....)))).(((.......)))....))))).........(....))))))).((((....))))..... ( -29.10) >DroSec_CAF1 105298 99 + 1 CCGCCCAAAUUAAUGGCUAAUGAAGCGCACGGAGCGCAGGUGAUUGCAGCCGAGUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAGCAGCUU ((((((..((...(((((......((((.(((...((((....))))..))).))))......)))))...))..)))))).((((....))))..... ( -31.90) >DroSim_CAF1 97074 99 + 1 CCGCCCAAAUUAAUGGCUAAUGAAGCGCACGGAGCGCAGGUGAUUGCAGCCGAGUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAGCAGCUU ((((((..((...(((((......((((.(((...((((....))))..))).))))......)))))...))..)))))).((((....))))..... ( -31.90) >DroEre_CAF1 108974 99 + 1 CCGCCCAAAUUAAUGGCUAAUGAAGCGCACGGAGCGCAGGUGAUUGCAGCCGAGUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCUAGCAGCUU ((((((..((...(((((......((((.(((...((((....))))..))).))))......)))))...))..)))))).(((......)))..... ( -31.30) >DroYak_CAF1 109348 99 + 1 CCGCCCAAAUUAAUGGCUAAUGAAGCGCACAGAGCGCAGGUGAUUGCAGCCGAGUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAGCAGCUU ((((((..((...(((((......((((.....)))).(((..(((....)))..))).....)))))...))..)))))).((((....))))..... ( -29.10) >DroAna_CAF1 104217 99 + 1 CCGCCCAAAUUAAUGGCUAAUGAAGCGCAAGGAGCGCAGGUGAUUGCAGCCGAAUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAAAAGCUU ((((((......(((((.......((((.....)))).(((.......)))....))))).........(....)))))))(((((.......))))). ( -28.80) >consensus CCGCCCAAAUUAAUGGCUAAUGAAGCGCACGGAGCGCAGGUGAUUGCAGCCGAGUGCCAUAAAAGUCAAGUAUCCGGGCGGAGUUUAACCGAGCAGCUU ((((((......(((((.......((((.....)))).(((.......)))....))))).........(....))))))).................. (-28.10 = -28.10 + -0.00)
Location | 4,676,596 – 4,676,695 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 97.44 |
Mean single sequence MFE | -30.86 |
Consensus MFE | -30.59 |
Energy contribution | -30.65 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.43 |
Structure conservation index | 0.99 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4676596 99 - 22407834 AAGCUGCUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCAUUCGGCUGCAAUCACCUGCGCUCCGUGCGCUUCAUUAGCCAUUGAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) ( -31.00) >DroSec_CAF1 105298 99 - 1 AAGCUGCUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCACUCGGCUGCAAUCACCUGCGCUCCGUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) ( -31.40) >DroSim_CAF1 97074 99 - 1 AAGCUGCUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCACUCGGCUGCAAUCACCUGCGCUCCGUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) ( -31.40) >DroEre_CAF1 108974 99 - 1 AAGCUGCUAGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCACUCGGCUGCAAUCACCUGCGCUCCGUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) ( -31.00) >DroYak_CAF1 109348 99 - 1 AAGCUGCUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCACUCGGCUGCAAUCACCUGCGCUCUGUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) ( -32.30) >DroAna_CAF1 104217 99 - 1 AAGCUUUUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCAUUCGGCUGCAAUCACCUGCGCUCCUUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.((.....))))...(((((.........((((.....)))).....)))))....)))))))))) ( -28.04) >consensus AAGCUGCUCGGUUAAACUCCGCCCGGAUACUUGACUUUUAUGGCACUCGGCUGCAAUCACCUGCGCUCCGUGCGCUUCAUUAGCCAUUAAUUUGGGCGG .((((....)))).....((((((((((...((.........((((..(((.(((......))))))..))))(((.....)))))...)))))))))) (-30.59 = -30.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:03 2006