Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,675,940 – 4,676,032 |
Length | 92 |
Max. P | 0.950064 |
Location | 4,675,940 – 4,676,032 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 95.65 |
Mean single sequence MFE | -17.20 |
Consensus MFE | -14.72 |
Energy contribution | -14.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.86 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4675940 92 + 22407834 UCCUCCAGAAAUCCUCAAAUUGCUCCUGCACCCGCUCGUUAUUUGUUACUAGUGCUGCUCUUCACUUGAAUCUGUUUUUUCAGCAAUUUGAC ..............(((((((((....(((..((((.((........)).)))).)))........((((........))))))))))))). ( -17.80) >DroSec_CAF1 104645 92 + 1 UCCUCCUGAAAUCCUCAAAUUGCUCCUGCACCCGCUCGUUAUUUGUUACUAGUGCUGCUCUUCACUUGGAUCUGUUUUUUCAGCAAUUUGAC ..............(((((((((....(((..((((.((........)).)))).)))........((((........))))))))))))). ( -17.30) >DroSim_CAF1 96430 92 + 1 UCCUGCUGAAAUCCUCAAAUUGCUCCUGCACCCGCUCGUUAUUUGUUACUAGUGCUGCUCUUCACUUGGAUCUGUUUUUUCAGCAAUUUGAC ..............(((((((((....(((..((((.((........)).)))).)))........((((........))))))))))))). ( -17.30) >DroEre_CAF1 108351 91 + 1 UCCUCCUGAAAUCCUCAAAUUGCU-CUGCACCCGCUCGUUAUUUGUUACUAGUGCCGCUCUUCACUUGGAUCUGUUUUUUCAGCAAUUUGAC ..............(((((((((.-..((...((((.((........)).))))..))........((((........))))))))))))). ( -16.20) >DroYak_CAF1 108669 92 + 1 UCCUGCUGAAAUCCUCAAAUUGCUCCUGCACCCGCUCGUUAUUUGUUACUAGUGCCACUACUCACUUGGUUCUGUUUUUUCAGCAAUUUGAC ...((((((((....(((((.((....((....))..)).)))))....(((.((((.........)))).)))...))))))))....... ( -17.40) >consensus UCCUCCUGAAAUCCUCAAAUUGCUCCUGCACCCGCUCGUUAUUUGUUACUAGUGCUGCUCUUCACUUGGAUCUGUUUUUUCAGCAAUUUGAC ..............(((((((((....((...((((.((........)).))))..))........((((........))))))))))))). (-14.72 = -14.96 + 0.24)
Location | 4,675,940 – 4,676,032 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.65 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -17.86 |
Energy contribution | -17.70 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.27 |
Structure conservation index | 0.92 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4675940 92 - 22407834 GUCAAAUUGCUGAAAAAACAGAUUCAAGUGAAGAGCAGCACUAGUAACAAAUAACGAGCGGGUGCAGGAGCAAUUUGAGGAUUUCUGGAGGA .((((((((((.........(.(((....)))...).(((((.((............)).)))))...)))))))))).............. ( -19.50) >DroSec_CAF1 104645 92 - 1 GUCAAAUUGCUGAAAAAACAGAUCCAAGUGAAGAGCAGCACUAGUAACAAAUAACGAGCGGGUGCAGGAGCAAUUUGAGGAUUUCAGGAGGA .(((((((((((......))..(((..((.....)).(((((.((............)).))))).)))))))))))).............. ( -19.40) >DroSim_CAF1 96430 92 - 1 GUCAAAUUGCUGAAAAAACAGAUCCAAGUGAAGAGCAGCACUAGUAACAAAUAACGAGCGGGUGCAGGAGCAAUUUGAGGAUUUCAGCAGGA ......(((((((((...(((((((..((.....)).(((((.((............)).))))).)))....))))....))))))))).. ( -20.60) >DroEre_CAF1 108351 91 - 1 GUCAAAUUGCUGAAAAAACAGAUCCAAGUGAAGAGCGGCACUAGUAACAAAUAACGAGCGGGUGCAG-AGCAAUUUGAGGAUUUCAGGAGGA .((((((((((................((.....)).(((((.((............)).)))))..-)))))))))).............. ( -18.70) >DroYak_CAF1 108669 92 - 1 GUCAAAUUGCUGAAAAAACAGAACCAAGUGAGUAGUGGCACUAGUAACAAAUAACGAGCGGGUGCAGGAGCAAUUUGAGGAUUUCAGCAGGA .((((((((((.......((..(((....).))..))(((((.((............)).)))))...)))))))))).............. ( -18.80) >consensus GUCAAAUUGCUGAAAAAACAGAUCCAAGUGAAGAGCAGCACUAGUAACAAAUAACGAGCGGGUGCAGGAGCAAUUUGAGGAUUUCAGGAGGA .((((((((((................((.....)).(((((.((............)).)))))...)))))))))).............. (-17.86 = -17.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:01 2006