Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,670,434 – 4,670,531 |
Length | 97 |
Max. P | 0.988336 |
Location | 4,670,434 – 4,670,531 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -14.90 |
Energy contribution | -15.29 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.33 |
Mean z-score | -3.02 |
Structure conservation index | 0.58 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4670434 97 - 22407834 UCGGCAGACAAAGGCUGACUGCCGGCAGUUAACUUAUAUAU------AGGAGUAUGUAUGUAUUUUCCCAAAUUGCCAGCAAAUAUGUGUACAACAUAAAUAA ..(((((.((.....)).)))))(((((((((..(((((((------(......))))))))..))....)))))))......(((((.....)))))..... ( -25.00) >DroSec_CAF1 99141 93 - 1 UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUGUAUAU------AGCAGUAU----GUAUUUUACCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA (((((........))))).(((((((((((.....((((((------(....)))----)))).......)))))))))))..(((((.....)))))..... ( -29.20) >DroSim_CAF1 90861 93 - 1 UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUGUAUAU------AGCAGUAU----GUAUUUUGCCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA (((((........))))).(((((((((((.....((((((------(....)))----)))).......)))))))))))..(((((.....)))))..... ( -29.20) >DroEre_CAF1 102771 97 - 1 CUGGCAGACAAAGGCUGACUGCCGGCUGGUAACGUAUAUAU--GUAUAGGAGUAU----GUAUUUUGGAAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA .((((((.((.....)).))))))((..((((.((((((((--........))))----)))).((....))))))..))...(((((.....)))))..... ( -23.90) >DroYak_CAF1 103026 99 - 1 CUGGCAGACAAAGGCCAACUGCCGGCAGUUAGCUUAUAUAUACGAGUAGGAGUAU----GUAUUUUGGGAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA .((((........))))..(((((((((((..((.((((((((........))))----))))...))..)))))))))))..(((((.....)))))..... ( -32.80) >DroMoj_CAF1 118148 80 - 1 -UGUUAAGCAAAGGCAA---GACGUCAAUAAACCUAUUUGU-------------------UAGCCUCACAAAUUGUGGGCAAAUAUGUGAACAACAUAAAUAA -.(((..((....))..---)))...((((((....)))))-------------------).(((.(((.....))))))...(((((.....)))))..... ( -14.20) >consensus UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUAUAUAU______AGGAGUAU____GUAUUUUGCCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA .((((........))))..(((((((((((.......((((..................)))).......)))))))))))..(((((.....)))))..... (-14.90 = -15.29 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:59 2006