Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,651,487 – 4,651,586 |
Length | 99 |
Max. P | 0.678014 |
Location | 4,651,487 – 4,651,586 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.53 |
Mean single sequence MFE | -43.95 |
Consensus MFE | -21.47 |
Energy contribution | -23.03 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.39 |
Mean z-score | -1.86 |
Structure conservation index | 0.49 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4651487 99 - 22407834 GCUGGGCGAGGGUUUGGUGGGGCGCUUGAUACUGGUACUGGGCCAAACUGAGGCCGAUGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAGACGCGCAUCU ((((((((.((.((..((..(((.(...((....))...).)))..))..)).))..))))))))....(((---(((((...)))..((....)))).))) ( -38.70) >DroPse_CAF1 102867 99 - 1 GUUGGGACAGCGUCUGCUGUGGGCCUUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAACAACGCAUCU ((((..((.((..(((((((((((((((((.(((((.....))))).)))))).....))))).))))))..---))(((...)))..))..))))...... ( -47.70) >DroGri_CAF1 87910 99 - 1 GCUGAUUGAGCGUUUGUUGCGGCGCCAAAUAUUGAUAUUGUGCCAGCGCCAGGCUGCAGCCGAUCAGCAGCA---GCGGCAGGGCGAGAUAGCUACGCAUCU ((((((((.(((((((.((((((((..((((....))))))))).))).)))))....))))))))))....---(((....(((......))).))).... ( -36.30) >DroMoj_CAF1 103332 99 - 1 GUUCGCGGAGCGUCUGCUGCGGCGCCAGGUAUUGGUAUUGAGCCAGGGUUAGGCUGCAGGCCAGCAGCAGCG---CUGCCAGGGCCAGAUAACGACGCAUCU ....(((.((((.(((((((((((((((...))))).(((((((.......)))).)))))).)))))))))---))((....))..........))).... ( -41.30) >DroAna_CAF1 85451 102 - 1 UCUGGGCGAGGGUCUGGUGGGGUGCCUGGUACUGGUACUGGGCCAGAGCCAGGGUGCAGCCCAGCAGCAGCACCAGUGCCGGGGCCAAAGAAACGCUCAUCU ..((((((....(((.....(((.((((((((((((.((((((....))).(((.....))).....))).)))))))))))))))..)))..))))))... ( -49.30) >DroPer_CAF1 99963 99 - 1 GUUGGGACAGCGUCUGCUGUGGGCCCUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAACAACGCAUCU ((((..((.((..(((((((((((((((((.(((((.....))))).)))))).....))))).))))))..---))(((...)))..))..))))...... ( -50.40) >consensus GCUGGGAGAGCGUCUGCUGCGGCGCCUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGCA___GCGGCAGGGCCAGAUAACAACGCAUCU .........((((....(((((..((((((.(((((.....))))).)))))))))))((((.((.((.......)).)).)))).........)))).... (-21.47 = -23.03 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:54 2006