Locus 170

Sequence ID 2L_DroMel_CAF1
Location 536,750 – 536,857
Length 107
Max. P 0.500000
window259

overview

Window 9

Location 536,750 – 536,857
Length 107
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 81.58
Mean single sequence MFE -45.42
Consensus MFE -27.65
Energy contribution -28.68
Covariance contribution 1.03
Combinations/Pair 1.26
Mean z-score -1.67
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 536750 107 - 22407834
UGCAUGCGCAUGUGGCGAUUUAGGGAUACCUUCUUAUCCGCGCUGUAGGAGCACUGGGUGCAGCCAUAUUGCUUUCCUGUCCUGGCCAUUUUGGCUGGUGGCUCG---GU---
.....(((.(((((((.......(((((......)))))(((((.(((.....)))))))).))))))))))...((.((((..(((.....)))..).)))..)---).--- ( -38.60)
>DroVir_CAF1 111940 110 - 1
UGCAUGCGCAUGUGCCGAUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCAUUGCGUGCACGCGUAUUGCUUGCCUGUGCGCGCCAUUUUUGCUGGUGGCUCC---GAGCC
.....(((((.((((((((.((((....))))...))))))))))).(((((...(((((((((.(((.....))).)))))))))((((......)))))))))---..)). ( -53.50)
>DroGri_CAF1 104094 110 - 1
UGCAUGCGCAUGUGUCGAUUGAGGGAGACCUUCUUGUCGGCACUGUAGGAGCACUGGGUGCACGCAUAUUGCUUGCCAAUGCGGGACAUCUUGUUGGGCGGCUCG---GAGCC
.(((((((((.((((((((.((((....))))...)))))))))))....((((...))))..))))...(((.(((...(((((....)))))..))))))...---..)). ( -43.70)
>DroWil_CAF1 168470 110 - 1
UGCAUCCGCAUGUGACGGUUGAGUGAGACCUUCUUAUCCGCGCUGUAGGAGCACUGCGUGCAGGCAUAUUGCUUGCCCAGGCGCGGCAUUUUGGCUGGCGGUUCGUUGGA---
(((....)))...(((((....((.((.((.......(((((((((((.....))))(.((((((.....)))))).).)))))))......)))).))...)))))...--- ( -39.32)
>DroMoj_CAF1 101747 110 - 1
UGCAUACGCAUGUGCCGGUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCACUGCGUGCAGGCGUACUGCUUGCCCGUGCGCGCCACCUUGGCGGGUGGCUCC---GAGCC
.((....(((.(((((((..((((....))))....)))))))))).(((((...(((.((((((.....)))))).)))((.((((.....)))).)).)))))---..)). ( -53.50)
>DroAna_CAF1 103178 107 - 1
UGCAUUCGCAUGUGUCGGUUGAGGGACACCUUCUUGUCGGCACUGUAGGAGCACUGGGAACAGGCGUAUUGCUUUCCAGUCCUGGCCAUUUUGGCCGGUGGCUCU---GA---
.......(((.(((((((..(((((...)))))...)))))))))).((((((((((((((((.....))).)))))))).((((((.....))))))..)))))---..--- ( -43.90)
>consensus
UGCAUGCGCAUGUGCCGAUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCACUGCGUGCAGGCAUAUUGCUUGCCAGUGCGCGCCAUUUUGGCUGGUGGCUCG___GA___
.......(((.((((((((.((((....))))...)))))))))))..((((...(((.((((((.....))))))...)))..(((.....))).....))))......... (-27.65 = -28.68 +   1.03) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:54 2006