Locus 17

Sequence ID 2L_DroMel_CAF1
Location 70,362 – 70,479
Length 117
Max. P 0.527672
window28

overview

Window 8

Location 70,362 – 70,479
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.46
Mean single sequence MFE -29.37
Consensus MFE -21.21
Energy contribution -20.63
Covariance contribution -0.58
Combinations/Pair 1.48
Mean z-score -0.98
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.527672
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 70362 117 - 22407834
CAAUUGCUUUUUUAUGCUCAUCUGCCGAUUCUGCUGCACUUAGCUUGGUUGUGGAAUCGGCAAGUUGCUUCACAGGUUCUUCAUGAUUGCCUCGCUUCAGCUGAAGCUGUUGCUCCU
((((.(((((............(((((((((..(.((.(.......))).)..)))))))))(((((......((((((.....))..)))).....)))))))))).))))..... ( -33.30)
>DroVir_CAF1 95359 117 - 1
CAAUAGCCUUUUUGUGUUCCUCCGAAGAGUCACCGGCAACCGGUUUUGUAGUCGAAUCCGCCAUCUGCUUUACGGGCUCCUCUUGUUUAACGCGCUUUAGCUGUUGCUGCUGUUCUU
(((((((.....((((((.....((.((((((((((...)))))...((((.((....))....))))......))))).))......)))))).....)))))))........... ( -27.50)
>DroSim_CAF1 44964 117 - 1
CAAUUGCUUUUUUAUGCUCAUCUGCCGAUUCUGCUGCACUUAGCUUAGUUGUGGAAUCGGCCAUUUGCUUCACAGGUUCUUCAUGAUUGCCUCGCUUCAGCUGCAGCUGUUGUUCCU
((((.((................((((((((..(...(((......))).)..))))))))....(((.....((((((.....))..)))).((....)).))))).))))..... ( -28.60)
>DroEre_CAF1 48731 117 - 1
CAAUUGCUUUCUUAUGCUCAUCCGCCGAUUCUGCUGCGCUAAGCUUGGUCGUGGAAUCGGCCAGUUGCUUUACAGGUUCUUCAUGAUUACCUCGUUUUAGCUGCUGCUGUUGCUCCU
((((.((................((((((((..(.((.(.......))).)..)))))))).(((.(((..((((((((.....))..)))).))...))).))))).))))..... ( -32.40)
>DroYak_CAF1 42171 117 - 1
CAAUGGCUUUCUUAUGCUCAUCUGCCGAUUCCGCUGCGCUAAGCUUGGUCGUGGAAUCGGCCAGUUGUUUCACAGGUUCUUCAUGAUUGCCUCGCUUCAGCUGCUGCUGUUGCUCCU
(((((((................(((((((((((.((.(.......))).)))))))))))((((((......((((((.....))..)))).....))))))..)))))))..... ( -37.40)
>DroMoj_CAF1 47275 117 - 1
CAAUUGCCUUUUUGUGCUCCUCAGAAGAUUCACAAGUAACUAAUUUAGUAGUUGAAUCCGCCAUCUGUUUUACGGGCUCCUCUUGUUUAACGCGCUUUAAUUGUUGCUGCUGUUCCU
.....((.....((((...((....))...))))((((((.((((.(((.(((((((......((((.....))))........)))))))..)))..))))))))))))....... ( -17.04)
>consensus
CAAUUGCUUUUUUAUGCUCAUCUGCCGAUUCUGCUGCACUUAGCUUGGUAGUGGAAUCGGCCAGUUGCUUCACAGGUUCUUCAUGAUUACCUCGCUUCAGCUGCUGCUGUUGCUCCU
.....((((......((......(((((((((((.((..........)).))))))))))).....)).....))))................((..((((....))))..)).... (-21.21 = -20.63 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:22 2006