Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,633,677 – 4,633,778 |
Length | 101 |
Max. P | 0.759661 |
Location | 4,633,677 – 4,633,778 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -18.93 |
Energy contribution | -20.35 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.68 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4633677 101 - 22407834 CAUACAAUGUAUAAGAUUAUUUAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUACAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCUUGG--CA ........................(((((((..((((((((....(((((((......(.....).....))))))).....)))))))))))))))..--.. ( -27.70) >DroSec_CAF1 70704 101 - 1 CAUACAAUAAAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGGCCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG--CA ....................((((..(((((..((((((((....(((((((...((.(.....).))..))))))).....)))))))))))))))))--.. ( -29.90) >DroSim_CAF1 70156 101 - 1 CAUACAAUACAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG--CA ....................((((..(((((..((((((((....(((((((...(..(.....)..)..))))))).....)))))))))))))))))--.. ( -27.30) >DroEre_CAF1 76033 101 - 1 CCUACAAUCUAUAAGAUUAUGCAGAAGCCCAUAAGGCUUUCCCAGCCGAUUCGAUGCAGGUAAACGACCAGAAUUGGGACAUGGAAGUCUUGGGCCGGG--CA .....((((.....)))).(((....(((((..((((((((....(((((((......(((.....))).))))))).....)))))))))))))...)--)) ( -29.30) >DroYak_CAF1 75718 96 - 1 GCCAC-----AUAAGAUUUUGCAAAAGCCCAUAAGGCUUUCCCAGCCGAUUCGAUGCAGGCAACCGACCAGAAUUGGGACAUGAAAGUCUUGGGCCGGG--CA (((.(-----(........)).....(((((..((((((((....(((((((....(.(....).)....))))))).....)))))))))))))..))--). ( -32.00) >DroPer_CAF1 88119 94 - 1 UAAACAACAAACAAGUUUAACCCAAAAUCCAGAAGCCUUUCCCAAGCGAUUCGCUGAAG------AACCAGAAUUAGGACG---CAGUCAAGGGCCUGGGCCA (((((.........)))))........(((((..((((((..(..(((.(((.(((...------...))).....)))))---).)..)))))))))))... ( -19.70) >consensus CAUACAAUAAAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG__CA ..........................(((((..((((((((....(((((((......(.....).....))))))).....)))))))))))))........ (-18.93 = -20.35 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:38 2006