Locus 1694

Sequence ID 2L_DroMel_CAF1
Location 4,632,043 – 4,632,137
Length 94
Max. P 0.999532
window2709

overview

Window 9

Location 4,632,043 – 4,632,137
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 94.75
Mean single sequence MFE -27.50
Consensus MFE -25.01
Energy contribution -25.18
Covariance contribution 0.17
Combinations/Pair 1.10
Mean z-score -2.86
Structure conservation index 0.91
SVM decision value 3.69
SVM RNA-class probability 0.999532
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4632043 94 + 22407834
AAAUCCUUUCAAUUAUCCAGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUCUAGAGGCCA
....(((((.(((.(((((((((((.((((((((....)))...((((......)))).)))))....))))))))).)).)))..)))))... ( -29.10)
>DroSec_CAF1 69102 94 + 1
AAAUCCUUUCAAUUAUCCGGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUCUAGAGGCCA
....(((((.(((.(((((((((((.((((((((....)))...((((......)))).)))))....))))))))).)).)))..)))))... ( -28.40)
>DroSim_CAF1 68528 94 + 1
AAAUCCUUUCAAUUAUCCGGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUUUAGAGGCCA
....(((((.((.((.(((((((((.((((((((....)))...((((......)))).)))))....)))))))))...)).)).)))))... ( -28.80)
>DroEre_CAF1 74414 94 + 1
AAAUCCUUUCAAUUAUCCAGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUCUAGAGGCCA
....(((((.(((.(((((((((((.((((((((....)))...((((......)))).)))))....))))))))).)).)))..)))))... ( -29.10)
>DroYak_CAF1 74047 94 + 1
AAAUCCUUUCAAUUAUCCGGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUCUAGAGGCUA
....(((((.(((.(((((((((((.((((((((....)))...((((......)))).)))))....))))))))).)).)))..)))))... ( -28.40)
>DroAna_CAF1 71529 92 + 1
AAAG-CUUUCAAUUAUCCAGACU-UCUGCCCAUGCAGCGAUUAAGGGGAACAGCCCUUAGGGCAUAUCAAAGUCUUGCAUUAUUCUAGUGCCCA
....-.............(((((-(.(((((..........((((((......))))))))))).....)))))).((((((...))))))... ( -21.20)
>consensus
AAAUCCUUUCAAUUAUCCAGACUUUCUGCCCAUCUAGCGAUUAAGUGGAACAGCCCGCAGGGCAUAUCAAAGUCUGGCAUUAUUCUAGAGGCCA
....(((((.(((.(((((((((((.((((((((....)))...((((......)))).)))))....))))))))).)).)))..)))))... (-25.01 = -25.18 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:37 2006