Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,631,177 – 4,631,271 |
Length | 94 |
Max. P | 0.949919 |
Location | 4,631,177 – 4,631,271 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.28 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -29.80 |
Energy contribution | -29.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.65 |
Structure conservation index | 0.79 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4631177 94 + 22407834 CAUGGGGCAUUGGGUGUAUGCAUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGGACCCAGUGCCGCCCCUUGCCACUGCCCCGUU .((((((((....(((((....))))----).....((((((.((....(((((....)))))((((........)))).)).)))))))))))))). ( -40.30) >DroSim_CAF1 67661 94 + 1 CAUGGGGCAUUGGGUGUAUGCAUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGGACCCAGUGCCGCCCCUUGCCACUGCCCCGUU .((((((((....(((((....))))----).....((((((.((....(((((....)))))((((........)))).)).)))))))))))))). ( -40.30) >DroEre_CAF1 73587 94 + 1 CAUGGGGCAUUGGUUGUGUGGCUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAAUCCAGUGCCGCCCCUUGCCACUCUUUCGAU ((.(((((....(((.((((....))----)).)))..((((((((...(((((....))))).....)))).))))))))).))............. ( -34.90) >DroYak_CAF1 73178 98 + 1 CAUGGGGCAUUGGGUGUAUGCCAACAUACGUAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAACCCAGUGCCGCCCCUUGCCACUCUUCCAUU .((((((((((((((.((((((.....(((.....))))))))).....(((((....)))))....))))))))))((.....)).......)))). ( -34.90) >consensus CAUGGGGCAUUGGGUGUAUGCAUACA____UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAACCCAGUGCCGCCCCUUGCCACUCCCCCGUU .((((((((.(((.((((....))))..........(((((((((....(((((....)))))......))).))))))......))).)))))))). (-29.80 = -29.80 + 0.00)
Location | 4,631,177 – 4,631,271 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.28 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -28.34 |
Energy contribution | -28.15 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.34 |
Structure conservation index | 0.78 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4631177 94 - 22407834 AACGGGGCAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAUGCAUACACCCAAUGCCCCAUG ...((((((((((((.((((((((.....).)))))((((....)))).....)).))))))....((----((....)))).......))))))... ( -39.70) >DroSim_CAF1 67661 94 - 1 AACGGGGCAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAUGCAUACACCCAAUGCCCCAUG ...((((((((((((.((((((((.....).)))))((((....)))).....)).))))))....((----((....)))).......))))))... ( -39.70) >DroEre_CAF1 73587 94 - 1 AUCGAAAGAGUGGCAAGGGGCGGCACUGGAUUCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAGCCACACAACCAAUGCCCCAUG .((....)).......(((((((((.((((..((.(((((....))))))).))))))))........----(((......)))......)))))... ( -31.90) >DroYak_CAF1 73178 98 - 1 AAUGGAAGAGUGGCAAGGGGCGGCACUGGGUUCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUACGUAUGUUGGCAUACACCCAAUGCCCCAUG .((((......((((..(((.((((.((((..((.(((((....))))))).)))))))).........(((((....))))).)))..)))))))). ( -34.90) >consensus AACGGAACAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA____UGUAGGCAUACACCCAAUGCCCCAUG ................(((((((((.((((..((.(((((....))))))).))))))))............(((......)))......)))))... (-28.34 = -28.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006