Locus 169

Sequence ID 2L_DroMel_CAF1
Location 519,858 – 519,951
Length 93
Max. P 0.635895
window258

overview

Window 8

Location 519,858 – 519,951
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 88.65
Mean single sequence MFE -19.68
Consensus MFE -15.24
Energy contribution -14.43
Covariance contribution -0.81
Combinations/Pair 1.19
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 0.21
SVM RNA-class probability 0.635895
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 519858 93 + 22407834
GGGGCAUAAAUACGCAUCUUUAGAUGAAGAUCAGGUACUAGGAAACAAAGGAACCUGACAAUAAAAGAUUGAUGAUCUUAUAAUCUGUUAUAC
(..((........))..)..(((((.((((((((((.((.(....)...)).))))..((((.....))))..))))))...)))))...... ( -18.30)
>DroSec_CAF1 65396 92 + 1
GGGGCAUAAAUACGCGUCUUUAGAUGAAGAUCGGGUACUAGGAAACAAAGGAACCUGACAAUAAAAGAUUGAUGAUCU-GUAAUCUGUACUAA
((.((........)).))..(((((..(((((((((.((.(....)...)).))))..((((.....))))..)))))-...)))))...... ( -19.70)
>DroSim_CAF1 67506 92 + 1
GGGGCAUAAAUACGCGUCUUUAGAUGAAGAUCGGGUACUAGGAAACAAAGGAACCUGACAAUAAAAGAUUGAUGAUCU-GUAAUCUGUAAUAA
((.((........)).))..(((((..(((((((((.((.(....)...)).))))..((((.....))))..)))))-...)))))...... ( -19.70)
>DroEre_CAF1 68929 90 + 1
GGGGCAUAAAUACGCAUCUCGAGAUGAGGAUCGGGUACUAGGAAACAAAGGAACCCGGCCAUAAAAGAUUGAUGAUCU-GUGACG--GAUAAA
..(((.......(.((((....)))).)...(((((.((.(....)...)).))))))))..............((((-(...))--)))... ( -21.00)
>consensus
GGGGCAUAAAUACGCAUCUUUAGAUGAAGAUCGGGUACUAGGAAACAAAGGAACCUGACAAUAAAAGAUUGAUGAUCU_GUAAUCUGUAAUAA
((..(((.(((...((((....))))....((((((.((.(....)...)).)))))).........))).)))..))............... (-15.24 = -14.43 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:53 2006