Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,596,137 – 4,596,230 |
Length | 93 |
Max. P | 0.778742 |
Location | 4,596,137 – 4,596,230 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.53 |
Mean single sequence MFE | -24.25 |
Consensus MFE | -18.71 |
Energy contribution | -17.60 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.33 |
Mean z-score | -2.96 |
Structure conservation index | 0.77 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4596137 93 + 22407834 GCGCAUUCGCCUGCAAAAUAUAAAAUGUGCAGUAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCAUUU (((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -23.70) >DroSec_CAF1 41009 93 + 1 GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU (((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -25.70) >DroSim_CAF1 38621 93 + 1 GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGUAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU (((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -23.70) >DroEre_CAF1 43639 90 + 1 GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUUCGGCUCAGUCAAUUUAAGUGACUGCUCACGUUUUUUAUUUUGC---UGAUCUUUU (((....)))..((((((((.((((((((.(((.......)))((((((.......))))))..)))))))).))))))))---......... ( -23.70) >DroYak_CAF1 44129 93 + 1 GCGUAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUUCGCUUUACUCGAUUUAAGUGACUGCUCACGUUUUUUAUUUUGUCCAUGAUCUUUU (((....)))..((((((((.((((((((.((((...((((((..........)))))).)))))))))))).))))))))............ ( -25.50) >DroAna_CAF1 40398 93 + 1 GGGUAUUUGACUUGAAAAUGCAAAAUGUGCAGCGAAUUUGCUUCGCUCAAUUUAAGUGGCUGCUCACGUUUUAUAUUUUAGCCGAGAUCCCUU (((.((((.(((((((..((((.....))))(((((.....)))))....)))))))(((((................))))).))))))).. ( -23.19) >consensus GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU ......((....((((((((.((((((((.((((........(((((.......))))).)))))))))))).))))))))....))...... (-18.71 = -17.60 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:26 2006