Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,593,515 – 4,593,634 |
Length | 119 |
Max. P | 0.983468 |
Location | 4,593,515 – 4,593,634 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.28 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -20.70 |
Energy contribution | -21.66 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.12 |
Mean z-score | -2.62 |
Structure conservation index | 0.78 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4593515 119 - 22407834 CUCGAAAUUUUCCUUCACUUAAGUGGCUACCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCGUCUUCAAACGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCAUCAGUUU .............((((((((((((........(((((.(((((....)))))..)))))((((((......))))))............-.....))))))))))))............ ( -31.40) >DroSec_CAF1 38389 119 - 1 CUCGGAAUUUUCCUUCACUUAAGUGGCUAUCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCACCAGUUU ...(((....)))((((((((((((.......((((((.(((((....)))))..))))))..............(((((.......)))-))...))))))))))))............ ( -32.90) >DroSim_CAF1 35995 119 - 1 CUCGGAAUUUUCCUUCACUCAAGUGGCUAUCAUAAAGUGUCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCACCAGUUU ...(((....)))(((((..(((((.......((((((.(((((....)))))..))))))..............(((((.......)))-))...)))))..)))))............ ( -27.10) >DroEre_CAF1 41070 119 - 1 CUCGAAAUUUUCCUUCACUUAAGUGGCGAUCAUAAAGUGGCUGUUUAGACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUCAAGUCAAACCCACCAGUUU ................((((.((((..(((..((((((..((((....))))...))))))...)))........(((((.......)))-))...)))).))))............... ( -19.10) >DroYak_CAF1 41521 106 - 1 CUCGGAAUUUUCCUUCACUUAAG--------------UGGCUGUUUAGACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUAGCCAAACACUUAAGUCAAAACCACCAGUUU ...(((....)))...(((((((--------------(((((((((((..((....)).(((((((......)))))))...)))).))))))....))))))))............... ( -22.20) >consensus CUCGGAAUUUUCCUUCACUUAAGUGGCUAUCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA_CCAAACACUUAGGUGAAACCCACCAGUUU .............((((((((((((..............(((((....)))))......(((((((......))))))).................))))))))))))............ (-20.70 = -21.66 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:24 2006