Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,592,353 – 4,592,444 |
Length | 91 |
Max. P | 0.914224 |
Location | 4,592,353 – 4,592,444 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -16.20 |
Energy contribution | -16.09 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4592353 91 + 22407834 UUUGACUU-UUGAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGUCGCACAU ........-..((((((((((.....)))((..((.((((....)))).))..))........................)))))))...... ( -14.40) >DroVir_CAF1 38840 92 + 1 UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUAUUUUGGUGUCAGGCGCACAU ..........................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.70) >DroPse_CAF1 47915 91 + 1 UUUGACUU-UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU ........-.................((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06) >DroGri_CAF1 37563 92 + 1 UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGUACAU ..........................((((((((((((((((((((((...............)))))))))....)))))))))))))... ( -21.66) >DroAna_CAF1 36708 91 + 1 UAUGACUU-UUGAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU ........-.................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.90) >DroPer_CAF1 40563 91 + 1 UUUGACUU-UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU ........-.................((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06) >consensus UUUGACUU_UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU ..........................(((((((((((((.............(((......)))............)))))))))))))... (-16.20 = -16.09 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:23 2006