Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,590,154 – 4,590,245 |
Length | 91 |
Max. P | 0.892345 |
Location | 4,590,154 – 4,590,245 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.43 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -24.73 |
Energy contribution | -24.23 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -1.61 |
Structure conservation index | 0.92 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4590154 91 + 22407834 AGCAGAGCAUUCACU-------UUGGGUCCCUUGGCUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGAGUCAAGCGCUUUGGCUCAUAAU ..((((((((((...-------..))))..((((((((((((...((((((..........)))...))))--))))))))))).))))))......... ( -27.40) >DroPse_CAF1 45126 100 + 1 AGCGAAGCAUUCACUGGGUUUUUUGGGUCCCUUGGCUCAUUUAAUUGUGGCAAUUUCUUUCGCCCACGCAGCGAGUGAGUCAAGCGCUUUGGCUCAUAAU ..((((((.......((..(.....)..))((((((((((((..(((((((..........).))))).)..)))))))))))).))))))......... ( -28.50) >DroSim_CAF1 32625 91 + 1 AACAGAGCAUUCACU-------UUGGGUCCCUUGACUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGGAUCAAGCGCUUUGGUUCAUAAU ..(((((((((((((-------(((((((....))))))......((((((..........)))...))))--))))))).....))))))......... ( -24.00) >DroEre_CAF1 37614 91 + 1 AGCAGAGCAUUCACU-------UUGGGUCCCUUGACUCACUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGAGUCAAGCCAUUUGGCUCAUAAU ....((((.......-------.(((....((((((((((((...((((((..........)))...))))--))))))))))))))....))))..... ( -29.70) >DroAna_CAF1 34326 96 + 1 AGCGAAGCAUUCACUU--UAUUUUGGGUCCCUUGGCUCAUUUAAUUACGGCAAUUUCUUUCGCCCACGCGG--ACUGAGUCAAGCGCUUUGGAUCAUAAU ..((((((....((((--......))))..(((((((((.((......(((..........)))......)--).))))))))).))))))......... ( -23.50) >DroPer_CAF1 37755 100 + 1 AGCGAAGCAUUCACUGGGUUUUUUGGGUCCCUUGGCUCAUUUAAUUGUGGCAAUUUCUUUCGCCCACGCAGCGAGUGAGUCAAGCGCUUUGGCUCAUAAU ..((((((.......((..(.....)..))((((((((((((..(((((((..........).))))).)..)))))))))))).))))))......... ( -28.50) >consensus AGCAAAGCAUUCACU_______UUGGGUCCCUUGGCUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG__AGUGAGUCAAGCGCUUUGGCUCAUAAU ..(((((((((((..........)))))..(((((((((((...(((((((..........)))...))))..))))))))))).))))))......... (-24.73 = -24.23 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:22 2006