| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,588,875 – 4,588,978 |
| Length | 103 |
| Max. P | 0.660377 |
| Location | 4,588,875 – 4,588,978 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.59 |
| Mean single sequence MFE | -16.50 |
| Consensus MFE | -13.69 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4588875 103 - 22407834 UUUGCCCAAAAAAAAA--AAAAUAACUGAAAACACAGGCCGAAAGGAAAUAAGAAAUACUUCGAGGAAUAAAGCGAAAGUAAAACAGCGACCAGUUUUUGUGUUU ................--...........((((((...((....)).....((((((...(((..(......((....))....)..)))...)))))))))))) ( -15.00) >DroSim_CAF1 31354 100 - 1 UUUGCCCAAAAAAAA---AAAA--ACUGAAAACACAGGCCGAAAGGAAAUAAGAAAUACUUCGAGGAAUAAAGCGAAAGUAAAACAGCGACCAGUUUUUGUGUUU ...............---((((--((((..........((....))..............(((..(......((....))....)..))).))))))))...... ( -15.10) >DroEre_CAF1 36357 94 - 1 UCUACC---------GAAAAAA--ACUGAAAGCACAGGCCGAAAGGAAAUAAGAAAUACUUCGAGGAAUAAAGCGAAAGUAAAACAGCGACCAGUUUUUGUGUUU ......---------...((((--((((...((.....((....))..........(((((((..........)).))))).....))...))))))))...... ( -17.40) >DroYak_CAF1 36769 103 - 1 GCUGCCAAAAAAACUGAAAAAA--ACUGAAAACACAGGCCGAAAGGAAAUAAGAAAUACUUCGGGGAAUAAAGCGAAAGUAAAACAGCGACCAGUUUUUGAGUUU ((((.........(((((....--.(((......))).((....)).............)))))........((....))....))))................. ( -18.50) >consensus UCUGCCCAAAAAAAAG__AAAA__ACUGAAAACACAGGCCGAAAGGAAAUAAGAAAUACUUCGAGGAAUAAAGCGAAAGUAAAACAGCGACCAGUUUUUGUGUUU .............................((((((...((....)).....((((((...(((..(......((....))....)..)))...)))))))))))) (-13.69 = -13.75 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:21 2006