Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,579,920 – 4,580,027 |
Length | 107 |
Max. P | 0.827299 |
Location | 4,579,920 – 4,580,027 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 89.34 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -18.42 |
Energy contribution | -19.66 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.45 |
Structure conservation index | 0.71 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4579920 107 + 22407834 CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU .(((.((((((((.((((.(((((.........((((((((((.......))))))))))))))).-------...))))))))))))......)))................. ( -30.40) >DroSec_CAF1 25078 107 + 1 CGGAGAUCAUCGCGUGACUGGCCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUAUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU .(((.((((((((.((((((.....))......((((((((((.......))))))))))......-------...))))))))))))......)))................. ( -25.00) >DroSim_CAF1 22501 107 + 1 CGGAGAUCAUCGCGUGACUGGCCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUAUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU .(((.((((((((.((((((.....))......((((((((((.......))))))))))......-------...))))))))))))......)))................. ( -25.00) >DroEre_CAF1 27401 107 + 1 CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU-------UCUGUCAGCGAUGAUAAAAUAUCAUACCACUCUCUUCUAAA .((((((((((((.((((.(((((.........((((((((((.......))))))))))))))).-------...)))))))))))................)))))...... ( -28.49) >DroYak_CAF1 24979 107 + 1 CGGAGAUCAUUGCGUGACUGGGCAACAAAAACCCAUGAUAAAUUCCUCACAUUUAUGAUGUGUCCUGCGAAUGUUUGCCAGCGAAG-------AUCAUACCACUCUGUUCUAAU (((((........((((.((((.........)))).((.....)).))))...((((((.(.((((((((....))).))).))).-------))))))...)))))....... ( -20.90) >consensus CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU_______UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU .(((.((((((((.((((..(....).......((((((((((.......))))))))))................))))))))))))......)))................. (-18.42 = -19.66 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:20 2006