Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,577,773 – 4,577,866 |
Length | 93 |
Max. P | 0.976550 |
Location | 4,577,773 – 4,577,866 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 69.04 |
Mean single sequence MFE | -31.69 |
Consensus MFE | -11.74 |
Energy contribution | -12.06 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.25 |
Mean z-score | -2.26 |
Structure conservation index | 0.37 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4577773 93 - 22407834 GAGGGCG---AUGAAG------AAGACUUGGAGUCGGACAA------UGGGUAUGAGACCACUCCGAGUCCCAGGAAGAAACGAUCACGAAAUGCCUAGUCCAUAAAA------- ..((((.---......------..((((((((((.((....------...........))))))))))))..(((......((....)).....))).))))......------- ( -24.46) >DroSec_CAF1 22978 104 - 1 GAGUGCU---AUGAAG------ACUCCUUGGACUCGGACUCGGAC--UCGGUCUGAGACCACUCCGAGUCCCAAGAAGAAACGGGCACCAAGUGCCUAGUCCAUAAAACAAGUAC ..((..(---(((..(------(((.(((((((((((((((((((--...))))))).....))))))).))))).......((((((...))))))))))))))..))...... ( -39.60) >DroSim_CAF1 20029 100 - 1 CAGUGCU---AUGAAG------ACUCCUUGGACUCGGACUG------UGGGUCUGAGACCACUCCGAGUCCCGAGAAGAAACGGGCACCAAGUGCCUAGUCCAUAAAACAAGUAC ..((..(---(((..(------(((.((((((((((((..(------(((........))))))))))).))))).......((((((...))))))))))))))..))...... ( -38.00) >DroEre_CAF1 25228 109 - 1 GCCAGCGACCAUGAAG------ACACCAUGGACUUGGACUCCGACAAUGGGUAUGAAACCACUUCGAGCCCGUCAAAGGAACGUUCAUCAAAAGCCUAGGUCAUAACGCAAAUUC ....(((..((((...------....))))(((((((..(((....((((((.((((.....)))).))))))....)))..(((.......))))))))))....)))...... ( -28.60) >DroYak_CAF1 22766 115 - 1 GUCAUCGACCAAGAAGACCAAGACCCCCUGGACUUGGACAUCGACAACGGUUAUGAAACCACUUCGAGUCCCGCGAAAGAACGGUCAUCAAAUGAAUAGGUCAUUAAGCAAAUUC ......((((..((((.(((((.((....)).)))))...........((((....)))).))))((...((((....)..)))...)).........))))............. ( -27.80) >consensus GAGAGCG___AUGAAG______ACUCCUUGGACUCGGACUC_GAC__UGGGUAUGAGACCACUCCGAGUCCCAAGAAGAAACGGUCACCAAAUGCCUAGUCCAUAAAACAAAUAC .............................(((((((((...........(((.....)))..)))))))))...........((((............))))............. (-11.74 = -12.06 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:19 2006