Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,573,139 – 4,573,235 |
Length | 96 |
Max. P | 0.680386 |
Location | 4,573,139 – 4,573,235 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.65 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -15.58 |
Energy contribution | -16.18 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.16 |
Mean z-score | -1.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4573139 96 + 22407834 -CGCACAAAACAUUUGCAAAUAUUGUCCUCACAUCAACAAAAUAGCCGUCAACCGGCAAGUUCGUUGCCUGAGUCUUUUGUUUGCA--AAAA-ACAGCAU -...........((((((((((..(..((((...((((.((...((((.....))))...)).))))..))))..)..))))))))--))..-....... ( -24.30) >DroSec_CAF1 17965 98 + 1 -CGCACAAACCAUUCGCAAAUAUUGUCCUCACAUCAACAAAGUAGCCGUCAACCGGCAAGUUCGUUGCCUGAGUCUUUGGUUUGCGAAAAAA-AGAGCAU -.((........(((((((((...(..((((...((((.((.(.((((.....)))).).)).))))..))))..)...)))))))))....-...)).. ( -25.86) >DroSim_CAF1 15091 98 + 1 -CGCACAAAACAUUCGCAAAUAUUGUCCUCACAUCAACAAAGUAACCGUCAACCGGCAAGUUCGUUGCCUGAGUCUUUUGUUUGCGAAAAAA-AGAGCGU -(((........((((((((((..(..((((...((((.((.(..(((.....)))..).)).))))..))))..)..))))))))))....-...))). ( -24.46) >DroEre_CAF1 20467 87 + 1 CCGCGCAAACCAUUUGUAAAAAUUGUCCUCAGAACAACAAAGUAUUCGUCAACCGGCAAGUUUGUUGCCUGAGUUUUUUGUUUGAAA------------- .....(((((.((((....))))....(((((..(((((((.(..(((.....)))..).))))))).)))))......)))))...------------- ( -15.20) >DroYak_CAF1 18117 100 + 1 UCGCGCAAACCAUUUGCAAAUAUUGUCCUCAAAACAACAAAGUAUCCGUCAACCGGCAAGUUCGUUGCCUGAGUCUUUUGUUUGAGAAAAAAUAAAGCAU ..((((((.....))))...((((...(((((....((((((.((...(((...(((((.....)))))))))).)))))))))))....))))..)).. ( -17.60) >consensus _CGCACAAACCAUUUGCAAAUAUUGUCCUCACAUCAACAAAGUAGCCGUCAACCGGCAAGUUCGUUGCCUGAGUCUUUUGUUUGCGAAAAAA_AGAGCAU ............((((((((((..(..((((...((((.((.(..(((.....)))..).)).))))..))))..)..))))))))))............ (-15.58 = -16.18 + 0.60)
Location | 4,573,139 – 4,573,235 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.65 |
Mean single sequence MFE | -26.49 |
Consensus MFE | -20.25 |
Energy contribution | -22.09 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.76 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4573139 96 - 22407834 AUGCUGU-UUUU--UGCAAACAAAAGACUCAGGCAACGAACUUGCCGGUUGACGGCUAUUUUGUUGAUGUGAGGACAAUAUUUGCAAAUGUUUUGUGCG- ..((...-..((--((((((.......((((.((((((((...((((.....))))...))))))).).)))).......))))))))........)).- ( -28.66) >DroSec_CAF1 17965 98 - 1 AUGCUCU-UUUUUUCGCAAACCAAAGACUCAGGCAACGAACUUGCCGGUUGACGGCUACUUUGUUGAUGUGAGGACAAUAUUUGCGAAUGGUUUGUGCG- ..((.(.-.(..((((((((.......((((.((((((((...((((.....))))...))))))).).)))).......))))))))..)...).)).- ( -32.04) >DroSim_CAF1 15091 98 - 1 ACGCUCU-UUUUUUCGCAAACAAAAGACUCAGGCAACGAACUUGCCGGUUGACGGUUACUUUGUUGAUGUGAGGACAAUAUUUGCGAAUGUUUUGUGCG- .(((.(.-....((((((((.......((((.((((((((...((((.....))))...))))))).).)))).......))))))))......).)))- ( -31.54) >DroEre_CAF1 20467 87 - 1 -------------UUUCAAACAAAAAACUCAGGCAACAAACUUGCCGGUUGACGAAUACUUUGUUGUUCUGAGGACAAUUUUUACAAAUGGUUUGCGCGG -------------...(((((......(((((((((((((.....((.....)).....))))))).))))))...........(....))))))..... ( -17.50) >DroYak_CAF1 18117 100 - 1 AUGCUUUAUUUUUUCUCAAACAAAAGACUCAGGCAACGAACUUGCCGGUUGACGGAUACUUUGUUGUUUUGAGGACAAUAUUUGCAAAUGGUUUGCGCGA .(((.......................(((((((((((((....(((.....)))....))))))).))))))..........((((.....))))))). ( -22.70) >consensus AUGCUCU_UUUUUUCGCAAACAAAAGACUCAGGCAACGAACUUGCCGGUUGACGGAUACUUUGUUGAUGUGAGGACAAUAUUUGCAAAUGGUUUGUGCG_ ..((........((((((((.......((((.((((((((...((((.....))))...))))))).).)))).......))))))))........)).. (-20.25 = -22.09 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:18 2006