Locus 168

Sequence ID 2L_DroMel_CAF1
Location 518,161 – 518,267
Length 106
Max. P 0.942799
window256 window257

overview

Window 6

Location 518,161 – 518,267
Length 106
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.31
Mean single sequence MFE -31.80
Consensus MFE -16.45
Energy contribution -17.12
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -3.12
Structure conservation index 0.52
SVM decision value 1.33
SVM RNA-class probability 0.942799
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 518161 106 + 22407834
UGAAAUGGAAU-GUCUCGCCUUGACUUCUACCUAACGAGGAAGUGAACUACCCAAUUCGUUACAGUCUGCGAAU---UGGCAGUCACUUCCUCGCAAAUUG--AUCCGAUCA
.((..(((((.-(((.......)))))))).....(((((((((((.((..(((((((((........))))))---))).))))))))))))).......--......)). ( -37.30)
>DroSec_CAF1 63727 103 + 1
UUAAGUG---U-GUCUCACCUUGACUUCUACCUAACGAGGAAGUGAACUAAACAAUUCGUUACAGUCUGCGAAU---UGGCAGCCACUUCCUCGCCAAUUG--AGCCGAUCA
(((((.(---(-(...))))))))...........((((((((((..((...((((((((........))))))---))..)).)))))))))).......--......... ( -29.60)
>DroSim_CAF1 65852 103 + 1
UUAAAUG---U-GUCUCACCUUGACUUCUACCUAACGAGGAAGUGAACUAAACAAUUCGUUACAGUCUGCGAAU---UGGCAGCCACUUCCUCGCCAAUUG--AGCCGAUCA
((((.((---.-(((.......)))..........((((((((((..((...((((((((........))))))---))..)).)))))))))).)).)))--)........ ( -28.30)
>DroEre_CAF1 67234 103 + 1
UCAAAUG---U-GCCUCACCUUGACUUCUACCCAACGAGGAAGUGUAUUGCCCAAUUCGUUACAGUCUGCGAAC---UGGCAGCCACUUCCUCGCCAAUUG--AGCCGAUCA
((((.((---.-((.((.....))............(((((((((..(((((...(((((........))))).---.))))).))))))))))))).)))--)........ ( -30.20)
>DroYak_CAF1 66256 103 + 1
UUAAAUG---U-GUCUCACCUUGAGUUCUGCCUAACGAGGAAGUGUACCAAACAAUUCGUCACAGUCUGCGAAU---UGGAAGCCACUUCCUCGCCAAUCA--AGCUGAUCA
.......---.-...(((.((((((((......)))(((((((((.......((((((((........))))))---)).....))))))))).....)))--)).)))... ( -30.30)
>DroAna_CAF1 81404 109 + 1
UUAGAGG---CGGUUAUUCCUUUUUUUUUUAAUAAUUAAGAGGGGUAUCUUCAAAUUCGUCACAGUCUGGGUCUCUGUGGCAGCCACUUCCCUGCCACUUGAGAGCCGAUCA
.....((---(((.((((((((((..((.....))..)))))))))).........)))))...(((.((.((((.(((((((........)))))))..)))).))))).. ( -35.10)
>consensus
UUAAAUG___U_GUCUCACCUUGACUUCUACCUAACGAGGAAGUGAACUAAACAAUUCGUUACAGUCUGCGAAU___UGGCAGCCACUUCCUCGCCAAUUG__AGCCGAUCA
...................................((((((((((..(((....((((((........))))))...)))....)))))))))).................. (-16.45 = -17.12 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 518,161 – 518,267
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.31
Mean single sequence MFE -35.07
Consensus MFE -18.59
Energy contribution -19.32
Covariance contribution 0.73
Combinations/Pair 1.35
Mean z-score -2.81
Structure conservation index 0.53
SVM decision value 1.07
SVM RNA-class probability 0.909632
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 518161 106 - 22407834
UGAUCGGAU--CAAUUUGCGAGGAAGUGACUGCCA---AUUCGCAGACUGUAACGAAUUGGGUAGUUCACUUCCUCGUUAGGUAGAAGUCAAGGCGAGAC-AUUCCAUUUCA
.....((((--(.((((((((((((((((((((((---(((((..........)))))).))))).))))))))))).))))).)).(((.......)))-..)))...... ( -39.80)
>DroSec_CAF1 63727 103 - 1
UGAUCGGCU--CAAUUGGCGAGGAAGUGGCUGCCA---AUUCGCAGACUGUAACGAAUUGUUUAGUUCACUUCCUCGUUAGGUAGAAGUCAAGGUGAGAC-A---CACUUAA
.....((((--(..((((((((((((((((((.((---(((((..........)))))))..))).)))))))))))))))...).)))).(((((....-.---))))).. ( -37.00)
>DroSim_CAF1 65852 103 - 1
UGAUCGGCU--CAAUUGGCGAGGAAGUGGCUGCCA---AUUCGCAGACUGUAACGAAUUGUUUAGUUCACUUCCUCGUUAGGUAGAAGUCAAGGUGAGAC-A---CAUUUAA
.....((((--(..((((((((((((((((((.((---(((((..........)))))))..))).)))))))))))))))...).)))).(((((....-.---))))).. ( -34.60)
>DroEre_CAF1 67234 103 - 1
UGAUCGGCU--CAAUUGGCGAGGAAGUGGCUGCCA---GUUCGCAGACUGUAACGAAUUGGGCAAUACACUUCCUCGUUGGGUAGAAGUCAAGGUGAGGC-A---CAUUUGA
.....(.((--((.(..(((((((((((..(((((---(((((..........)))))).))))...)))))))))))..).............)))).)-.---....... ( -38.44)
>DroYak_CAF1 66256 103 - 1
UGAUCAGCU--UGAUUGGCGAGGAAGUGGCUUCCA---AUUCGCAGACUGUGACGAAUUGUUUGGUACACUUCCUCGUUAGGCAGAACUCAAGGUGAGAC-A---CAUUUAA
...(((.((--((((((((((((((((((((..((---(((((((.....)).)))))))...))).)))))))))))))).......))))).)))...-.---....... ( -38.61)
>DroAna_CAF1 81404 109 - 1
UGAUCGGCUCUCAAGUGGCAGGGAAGUGGCUGCCACAGAGACCCAGACUGUGACGAAUUUGAAGAUACCCCUCUUAAUUAUUAAAAAAAAAAGGAAUAACCG---CCUCUAA
.....(((((((..(((((((........))))))).)))).((...........(((...((((......))))....)))..........)).......)---))..... ( -22.00)
>consensus
UGAUCGGCU__CAAUUGGCGAGGAAGUGGCUGCCA___AUUCGCAGACUGUAACGAAUUGGUUAGUACACUUCCUCGUUAGGUAGAAGUCAAGGUGAGAC_A___CAUUUAA
..............((((((((((((((((((......(((((..........)))))....)))).))))))))))))))............................... (-18.59 = -19.32 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:52 2006