Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,567,415 – 4,567,506 |
Length | 91 |
Max. P | 0.753649 |
Location | 4,567,415 – 4,567,506 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.31 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -16.54 |
Energy contribution | -16.42 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -2.69 |
Structure conservation index | 0.69 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4567415 91 - 22407834 AGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAGUACAAAAGUACCCUAGUUA ........((((((((((....))))))))))(((.((((.......)))).....((((((((((.....)).)))))))))))...... ( -24.50) >DroSec_CAF1 12188 89 - 1 CGUUUUCUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG--CAAAAACGCUCUAGUUG .....(((((((((((((....)))))))))))))...((((....(((.(.((((.....))))))))(((--(......))))..)))) ( -25.50) >DroSim_CAF1 9300 89 - 1 CGUUUUCUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG--CAAAAACGCUCUAGUUG .....(((((((((((((....)))))))))))))...((((....(((.(.((((.....))))))))(((--(......))))..)))) ( -25.50) >DroEre_CAF1 12337 89 - 1 CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAUGCUUUCAGCAAGAAUGAGCUUAAUACUGUUGACCAUGAG--CAAUAAUGCUCUAGUUG ((((((..((((((((((....))))))))))(((.....)))))))))(((........)))(((...(((--((....)))))..))). ( -24.50) >DroYak_CAF1 12190 89 - 1 CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGAUUUCAACAAGAAUGAGCUUUAUACUCUUGACCAUGAC--ACAUAAUCCUCUAGUUG .(((.(((((((((((((....)))))))))))))....)))......(((..((((..((........)).--..))))..)))...... ( -19.70) >consensus CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG__CAAAAAUGCUCUAGUUG .(((.(((((((((((((....)))))))))))))....)))................................................. (-16.54 = -16.42 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:16 2006