Locus 1678

Sequence ID 2L_DroMel_CAF1
Location 4,562,707 – 4,562,798
Length 91
Max. P 0.999910
window2685

overview

Window 5

Location 4,562,707 – 4,562,798
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 92.31
Mean single sequence MFE -23.07
Consensus MFE -22.89
Energy contribution -22.70
Covariance contribution -0.19
Combinations/Pair 1.13
Mean z-score -2.33
Structure conservation index 0.99
SVM decision value 4.50
SVM RNA-class probability 0.999910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4562707 91 - 22407834
CCUAGCUGUUUUGCAAGCUUCCAGCUUGGCUUAUUUGCUUUUCCAGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUAUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... ( -23.00)
>DroSec_CAF1 7501 91 - 1
CCUAGCUGUUUUGCAAGCUUCCAGCUUGGCUUAUUUGCUUUUCCAGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUAUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... ( -23.00)
>DroSim_CAF1 2869 91 - 1
CCUAGCUGUUUUGCAAGCUUCCAGCUUGGCUUAUUUGCUUUUCCAGCAAAUGCAUGCUUUUCAGACAGCUUCCUUUUGUAUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... ( -22.90)
>DroEre_CAF1 7506 91 - 1
CAUAGCUGUUUUGCAAGCUUCAAGCUUGGCUUAUUUGCUUUCCCGGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUGUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... ( -23.00)
>DroYak_CAF1 7506 91 - 1
CCUAGCUGUUUUGCAAGCUUCUAGCUUGGCUUAUUUGCUUUCCCGGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUGUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... ( -23.00)
>DroAna_CAF1 7517 91 - 1
UCCAGCUGUUUUGCAAGCUUUGAGCUCGGCUUUUCUGCUUCUCUGGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUUAUCCUGUAGCC
...((((((((.((((((.....)))..((...((((((.....)))))).)).))).....)))))))).......(((((...))))). ( -23.50)
>consensus
CCUAGCUGUUUUGCAAGCUUCCAGCUUGGCUUAUUUGCUUUUCCAGCAGAUGCAUGCUUUUCAGACAGCUUCCUUUUGUAUUCCCGUAGUC
...((((((((..(((((.....)))))((.((((((((.....))))))))...)).....))))))))..................... (-22.89 = -22.70 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:15 2006