Locus 1677

Sequence ID 2L_DroMel_CAF1
Location 4,556,080 – 4,556,200
Length 120
Max. P 0.554707
window2684

overview

Window 4

Location 4,556,080 – 4,556,200
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -44.67
Consensus MFE -25.08
Energy contribution -23.20
Covariance contribution -1.88
Combinations/Pair 1.52
Mean z-score -1.69
Structure conservation index 0.56
SVM decision value 0.04
SVM RNA-class probability 0.554707
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4556080 120 - 22407834
CAAAUUGGGCUGUGUGCAACUGCAAUAUUGCCAGCAGGACGGACAAUGUGCCCAGGGAAGCAUAUGCUCCCAUGGAAUUUGCAGUCCGCUGUGCAGCACCAACCGCGAUUGUAUUUCGGA
....((((((((..(((.((((((((((((((........)).))))))..(((((((.((....)))))).)))....))))))..)).)..)))).))))(((.(((...))).))). ( -43.70)
>DroVir_CAF1 875 120 - 1
UAAACAAGGCUGUGUGCCGCUUCAAUACUGCCAACAGGACACUCAGUGUCCACAGGGCAGCAUCUGUGCGCACGGAAUAUGCAGUCCUUUAUGCAGCAGUAAUCGCGAUUGUAUUUCGGA
...(((((((.....)))((.....((((((.....((((((...))))))..(((((.((((((((....)))))...))).))))).......))))))...))..))))........ ( -37.20)
>DroPse_CAF1 875 120 - 1
CAAACAGGGAUGUGUGCCACUGCAGUACUGCCAGCAGGAUGCGCAGUGCGCACAGGGAAGCAUUUGCUCGCAUGGAAUUUGCAGCCCCCUCUGCAGCACCAACAGGGAUUGCAUCUCGGA
......(((((((...((.(((..(((((((((......)).)))))))(((.((((.(((....))).(((.......)))....)))).)))........)))))...)))))))... ( -43.40)
>DroGri_CAF1 875 120 - 1
CAAGCAAGGCUGUGUGUCGCUGCAGUACUGUCAAAAAGAUGCACAGUGCCCUCAGGGCAGCAUCUGCGCCCAUGGCAUCUGUAGUCCACUGUGUAGCAGUAAUCGUGAUUGCAUUUCGGA
...(((((((.....)))(((((....((.......)).(((((((((..((((((((((...))))(((...))).)))).))..))))))))))))))........))))........ ( -39.60)
>DroMoj_CAF1 866 120 - 1
CAAACAGGGCUGCGUCCAACUGCAGUACUGCCAGCAGGACGCGCAGUGCCCGCAGGGCAGCAUCUGUGCCCACGGCAUCUGCAGUCCGCUGUGCAGCAGCAAUCGCGACUGCAUCGCGGA
......(((((((((((..(((((....)).)))..))))))((((((((....(((((.(....))))))..)))).)))))))))((.((((((..((....))..)))))).))... ( -58.60)
>DroAna_CAF1 875 120 - 1
CAAGCUGGGCUGUGUCCCACUGCAAUACUGCCAGAAGGAUGGCCAGUGUGCCCAGGGAAGCAUCUGCUCCCAUGGCAUAUGUAGCCCCCUGUGCAGCACCAAGCGCGACUGCAUCUCGGA
...((((((((((((((..(((((....)).)))..))))(((..(((((((..((((.((....))))))..)))))))...)))......))))).)).)))((....))........ ( -45.50)
>consensus
CAAACAGGGCUGUGUGCCACUGCAAUACUGCCAGCAGGACGCACAGUGCCCACAGGGAAGCAUCUGCGCCCAUGGAAUAUGCAGUCCCCUGUGCAGCACCAAUCGCGAUUGCAUCUCGGA
......(((((((...........((((((.............)))))).....((((.((....)))))).........)))))))...((((((..((....))..))))))...... (-25.08 = -23.20 +  -1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:14 2006