| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,551,941 – 4,552,033 |
| Length | 92 |
| Max. P | 0.980197 |
| Location | 4,551,941 – 4,552,033 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 72.64 |
| Mean single sequence MFE | -16.39 |
| Consensus MFE | -9.66 |
| Energy contribution | -10.23 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4551941 92 - 22407834 AUCACAUAGUU-UUGAGUUGUUUAAAC-ACAAAAACUUAAACCAGCUAAUUAGCUAAUUCCACUAAUCUAUCGGCCCUGGCGGCUGAUUAGAAC ......(((((-(((((((........-.....))))))))..((((....))))......)))).((((((((((.....)))))).)))).. ( -20.22) >DroGri_CAF1 66304 81 - 1 AUUAUUUAGCU-AUGAGUUGUUUAUAAAA--AACAUUUAAAC--------CAGCUAAUUUCACUAAUUCUACAGCUUUUACAGCUGACAC-AA- .....((((((-.(((((.((((.....)--))))))))...--------.))))))..............(((((.....)))))....-..- ( -12.70) >DroEre_CAF1 60830 92 - 1 AUUACAUAGUU-UUGAGUUGUUUAAAC-ACAAAAACUUAAACCAGCUAAUUAGCUAAUUCCACUAAUUUAUCGGCCCUCGCGGCUGCUUAGAAC ......(((((-(((((((........-.....))))))))..((((....))))......)))).((((.(((((.....)))))..)))).. ( -15.82) >DroWil_CAF1 21882 83 - 1 AUUAUUUAGUUAAUGAGUUUUAUG--------AGACUUAUACCAAC---CCAGCUAAUUCCACUAAUUCAACAGCUUUUGCGGCUGAAUAGUAC (((((((((((.((((((((....--------))))))))......---........................((....))))))))))))).. ( -15.50) >DroYak_CAF1 48458 83 - 1 AUUACAUAGUU-UUGAGUUGUUUAAAC-ACAAAAACUUAAACCAGCUAAUUAGCUAAUUCCACUAAUUUAUCG---------GCUGAUUAGAAC ........(.(-(((((((........-.....)))))))).)..(((((((((..((...........))..---------)))))))))... ( -15.62) >DroAna_CAF1 66621 91 - 1 AUCUUCUAGUU-UUGAGUUGUUUAAAC-ACAAAAACUUAAACCAGCUAAUUAGCUAAUUCCACUAAUUCAA-GGCCCUUGCGGCCACUUAGAGC ...((((((..-(((((((((((((..-........)))))).((((....)))).........)))))))-((((.....))))..)))))). ( -18.50) >consensus AUUACAUAGUU_UUGAGUUGUUUAAAC_ACAAAAACUUAAACCAGCUAAUUAGCUAAUUCCACUAAUUCAACGGCCCUUGCGGCUGAUUAGAAC ......(((((....((((((((((...........)))))).))))....)))))...............(((((.....)))))........ ( -9.66 = -10.23 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:11 2006