Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,547,818 – 4,547,927 |
Length | 109 |
Max. P | 0.961273 |
Location | 4,547,818 – 4,547,927 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -21.75 |
Energy contribution | -21.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.88 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4547818 109 + 22407834 UGUGCUUUAUCGCUGAUAUAUUUAUGUUUUUUUUUUUUUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG ..((((((....((.((((((...((((((........((((..(....)..)))).))))))..(((..((.....))..))))))))).))..))))))(....).. ( -23.90) >DroSim_CAF1 14962 101 + 1 UGUGCUUUAUCGCUGAUAUAUUUUGGU--------UUUUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG ..((((((....((.((((((....((--------(((((((..(....)..)))).)))))...(((..((.....))..))))))))).))..))))))(....).. ( -25.40) >DroEre_CAF1 56772 95 + 1 UGUGCUUUAUCGCUGUUAUAUUUU--------------UUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG ..((((((.((.(((((.((((.(--------------((((......))))).)))).))))).(((..((.....))..)))........)).))))))(....).. ( -24.50) >DroYak_CAF1 44391 98 + 1 UGUGCUUUAUCGCUGUUAUAUUUUUG-----------UUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG ..((((((.((.(((((.(((...((-----------(((((......)))))))))).))))).(((..((.....))..)))........)).))))))(....).. ( -25.40) >consensus UGUGCUUUAUCGCUGAUAUAUUUUUG___________UUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG ..((((((.((((.........................((((..(....)..))))....(((..(((..((.....))..))).)))))))...))))))(....).. (-21.75 = -21.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:10 2006