Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,530,092 – 4,530,212 |
Length | 120 |
Max. P | 0.539912 |
Location | 4,530,092 – 4,530,212 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -42.40 |
Consensus MFE | -30.92 |
Energy contribution | -30.10 |
Covariance contribution | -0.82 |
Combinations/Pair | 1.48 |
Mean z-score | -1.16 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4530092 120 - 22407834 CGACGCUGCAUCAAUCCCUGCCAAGAGGACUCUUGCGGCGAGAAUGCCGAGUGCAUACCCGUGAACCAUGGCACUGAAUGUCGCUGCCUGCCCGGAUUUCUGGGCAACGCCUACGUGCAG ...(((((((....(((((....)).)))....)))))))....(((((((.((...............((((.((.....)).))))(((((((....)))))))..)))).)).))). ( -44.20) >DroVir_CAF1 45644 120 - 1 CGACGCUGUAUUAAUCCUUGCCAAGAGGAUUCGUGCGGCGAAAACGCCGAGUGUGUUCCGGUUAACCAUGGCAUCGAUUGUCGCUGCUUACCCGGAUACCUAGGCAAUGCGUAUGUUCUA ...((((((((.(((((((.....))))))).)))))))).....(((.((.((((.((((.(((.(((((((.....))))).)).))).)))))))))).)))............... ( -44.50) >DroGri_CAF1 46103 120 - 1 CGUCGUUGCAUCAAUCCCUGCCAAGAGGAUUCCUGUGGCGAGAACGCCGAAUGUGUACCGGUCAACCAUGGCAUCGACUGCCGCUGUUUGCCCGGCUACUUGGGUAAUGCCUAUGUUUUA ..((((..((..(((((((....)).)))))..))..))))(((((........(((((((.(((.(((((((.....))))).)).))).)))).))).((((.....))))))))).. ( -39.30) >DroWil_CAF1 306 120 - 1 CGUCGCUGCAUUAAUCCAUGCCAAGAAGAUUCUUGUGGUGAGAACGCCGAAUGUGUGCCGGUUAAUCAUGGCAUCGAUUGUCACUGUUUGCCUGGUUUCUUGGGAAAUGCCUAUGUCCAG ....((.(((.(((((.((((((.((...(((((.....))))).((((.........))))...)).)))))).)))))....)))..))((((...(.((((.....)))).).)))) ( -29.50) >DroMoj_CAF1 52676 120 - 1 CGACGCUGCAUAAAUCCUUGCCAAGAGGAUUCGUGCGGAGAGAACGCUGAGUGUGUGCCGGUCAACCACGGCAUCAACUGUCGCUGCUUGCCCGGAUAUUUGGGCAAUGCAUACGUUCUU .....(((((..(((((((.....)))))))..))))).(((((((...(((..((((((........))))))..))).....(((((((((((....)))))))).)))..))))))) ( -49.60) >DroAna_CAF1 45439 120 - 1 CGCCGCUGCAUCAAUCCCUGCCAGGAGGAUUCGUGCGGCGAGAAUGCCGAGUGCAUUCCCGUCAACCACGGCACCGACUGUCGCUGCCUGCCCGGAUUCCUGGGCAACGCCUAUGUCCAG .((((..((((.(((((((....)).))))).))))((((.((((((.....)))))).)))).....))))...(((....((....(((((((....)))))))..))....)))... ( -47.30) >consensus CGACGCUGCAUCAAUCCCUGCCAAGAGGAUUCGUGCGGCGAGAACGCCGAGUGUGUACCGGUCAACCAUGGCAUCGACUGUCGCUGCUUGCCCGGAUACCUGGGCAAUGCCUAUGUUCAG ...(((((((..(((((((....)).)))))..))))))).....(((.((......((((.(((.(((((((.....))))).)).))).))))....)).)))............... (-30.92 = -30.10 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:07 2006